Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009363A_C01 KMC009363A_c01
(620 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177608.1| unknown protein; protein id: At1g74700.1 [Arabi... 70 1e-15
gb|AAG52354.1|AC011765_6 unknown protein; 121665-123450 [Arabido... 70 2e-11
emb|CAD22100.1| RNase Z [Arabidopsis thaliana] 70 2e-11
ref|NP_178532.2| hypothetical protein; protein id: At2g04530.1, ... 44 2e-06
emb|CAD22099.1| RNase Z [Arabidopsis thaliana] 44 2e-06
>ref|NP_177608.1| unknown protein; protein id: At1g74700.1 [Arabidopsis thaliana]
gi|25406366|pir||C96776 hypothetical protein F25A4.32
[imported] - Arabidopsis thaliana
gi|5882718|gb|AAD55271.1|AC008263_2 ESTs gb|AA067482 and
gb|AI100542 come from this gene. [Arabidopsis thaliana]
Length = 290
Score = 70.1 bits (170), Expect(2) = 1e-15
Identities = 32/43 (74%), Positives = 38/43 (87%)
Frame = -3
Query: 564 RLQNRAILLIHFSARYTVEEIQQAVCALPPPLAGRTFALTEGF 436
+ +N+AILLIHFSARYTV+EI+ AV ALPPPL GR FALT+GF
Sbjct: 248 KFENKAILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 290
Score = 34.7 bits (78), Expect(2) = 1e-15
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = -2
Query: 619 NNSITVEHAKDYGHTHLSE 563
++S++VEHA+DYGH H+SE
Sbjct: 214 DDSVSVEHARDYGHIHISE 232
>gb|AAG52354.1|AC011765_6 unknown protein; 121665-123450 [Arabidopsis thaliana]
Length = 281
Score = 70.1 bits (170), Expect = 2e-11
Identities = 32/43 (74%), Positives = 38/43 (87%)
Frame = -3
Query: 564 RLQNRAILLIHFSARYTVEEIQQAVCALPPPLAGRTFALTEGF 436
+ +N+AILLIHFSARYTV+EI+ AV ALPPPL GR FALT+GF
Sbjct: 239 KFENKAILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 281
Score = 39.3 bits (90), Expect = 0.042
Identities = 13/29 (44%), Positives = 23/29 (78%)
Frame = -2
Query: 619 NNSITVEHAKDYGHTHLSEVAEQSNPFDS 533
++S++VEHA+DYGH H+SE+ + F++
Sbjct: 214 DDSVSVEHARDYGHIHISEIVNHAEKFEN 242
>emb|CAD22100.1| RNase Z [Arabidopsis thaliana]
Length = 280
Score = 70.1 bits (170), Expect = 2e-11
Identities = 32/43 (74%), Positives = 38/43 (87%)
Frame = -3
Query: 564 RLQNRAILLIHFSARYTVEEIQQAVCALPPPLAGRTFALTEGF 436
+ +N+AILLIHFSARYTV+EI+ AV ALPPPL GR FALT+GF
Sbjct: 238 KFENKAILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 280
Score = 39.3 bits (90), Expect = 0.042
Identities = 13/29 (44%), Positives = 23/29 (78%)
Frame = -2
Query: 619 NNSITVEHAKDYGHTHLSEVAEQSNPFDS 533
++S++VEHA+DYGH H+SE+ + F++
Sbjct: 213 DDSVSVEHARDYGHIHISEIVNHAEKFEN 241
>ref|NP_178532.2| hypothetical protein; protein id: At2g04530.1, supported by cDNA:
gi_20466196 [Arabidopsis thaliana]
gi|20466197|gb|AAM20416.1| unknown protein [Arabidopsis
thaliana] gi|24899839|gb|AAN65134.1| unknown protein
[Arabidopsis thaliana]
Length = 354
Score = 43.9 bits (102), Expect(2) = 2e-06
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = -3
Query: 561 LQNRAILLIHFSARYTVEEIQQAVCALPPPLAGRTFALTEGF 436
++++ +LL HFS+RY VEEI++AV L ++ + LTEGF
Sbjct: 308 IRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGF 349
Score = 29.3 bits (64), Expect(2) = 2e-06
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 619 NNSITVEHAKDYGHTHLSEVAEQS 548
+ S + EHA+ GHTH+S++ E +
Sbjct: 282 DESFSTEHAQALGHTHISQIIENA 305
>emb|CAD22099.1| RNase Z [Arabidopsis thaliana]
Length = 354
Score = 43.9 bits (102), Expect(2) = 2e-06
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = -3
Query: 561 LQNRAILLIHFSARYTVEEIQQAVCALPPPLAGRTFALTEGF 436
++++ +LL HFS+RY VEEI++AV L ++ + LTEGF
Sbjct: 308 IRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGF 349
Score = 29.3 bits (64), Expect(2) = 2e-06
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 619 NNSITVEHAKDYGHTHLSEVAEQS 548
+ S + EHA+ GHTH+S++ E +
Sbjct: 282 DESFSTEHAQALGHTHISQIIENA 305
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,897,686
Number of Sequences: 1393205
Number of extensions: 12048375
Number of successful extensions: 37679
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 36009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37653
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
