Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009352A_C01 KMC009352A_c01
(489 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199516.1| putative protein; protein id: At5g47050.1, supp... 87 1e-16
gb|AAF25971.1|AC017118_8 F6N18.12 [Arabidopsis thaliana] 82 4e-15
ref|NP_564408.1| expressed protein; protein id: At1g32740.1, sup... 82 4e-15
ref|NP_193503.1| hypothetical protein; protein id: At4g17680.1 [... 74 9e-13
gb|AAM91645.1| unknown protein [Arabidopsis thaliana] 74 9e-13
>ref|NP_199516.1| putative protein; protein id: At5g47050.1, supported by cDNA:
gi_17380821, supported by cDNA: gi_20259022 [Arabidopsis
thaliana] gi|9759447|dbj|BAB10244.1| contains similarity
to S-ribonuclease binding protein~gene_id:MQD22.19
[Arabidopsis thaliana] gi|17380822|gb|AAL36098.1|
unknown protein [Arabidopsis thaliana]
gi|20259023|gb|AAM14227.1| unknown protein [Arabidopsis
thaliana]
Length = 300
Score = 87.0 bits (214), Expect = 1e-16
Identities = 39/67 (58%), Positives = 47/67 (69%)
Frame = -3
Query: 487 EDCESAHVDPVRVAAARPKCRGCERRVASVVVLPCRHMCICAECDAHFRACPVCLTLKNS 308
ED ESA+VDP RV P CR C RR A+V+ LPCRH+ +C ECD R CP+CL+ KNS
Sbjct: 234 EDAESAYVDPDRVEMIGPGCRICRRRSATVLALPCRHLVMCTECDGSVRICPLCLSTKNS 293
Query: 307 TVEVLLS 287
+VEV S
Sbjct: 294 SVEVFYS 300
>gb|AAF25971.1|AC017118_8 F6N18.12 [Arabidopsis thaliana]
Length = 277
Score = 81.6 bits (200), Expect = 4e-15
Identities = 37/65 (56%), Positives = 46/65 (69%)
Frame = -3
Query: 487 EDCESAHVDPVRVAAARPKCRGCERRVASVVVLPCRHMCICAECDAHFRACPVCLTLKNS 308
+D ES +VDP RV RP C+ C R A+VVVLPCRH+ IC CD ACP+CLTL+NS
Sbjct: 213 DDAESVYVDPERVK--RPNCKACREREATVVVLPCRHLSICPGCDRTALACPLCLTLRNS 270
Query: 307 TVEVL 293
+VE +
Sbjct: 271 SVEAI 275
>ref|NP_564408.1| expressed protein; protein id: At1g32740.1, supported by cDNA:
257053. [Arabidopsis thaliana]
gi|21554545|gb|AAM63608.1| unknown [Arabidopsis
thaliana]
Length = 312
Score = 81.6 bits (200), Expect = 4e-15
Identities = 37/65 (56%), Positives = 46/65 (69%)
Frame = -3
Query: 487 EDCESAHVDPVRVAAARPKCRGCERRVASVVVLPCRHMCICAECDAHFRACPVCLTLKNS 308
+D ES +VDP RV RP C+ C R A+VVVLPCRH+ IC CD ACP+CLTL+NS
Sbjct: 248 DDAESVYVDPERVK--RPNCKACREREATVVVLPCRHLSICPGCDRTALACPLCLTLRNS 305
Query: 307 TVEVL 293
+VE +
Sbjct: 306 SVEAI 310
>ref|NP_193503.1| hypothetical protein; protein id: At4g17680.1 [Arabidopsis
thaliana] gi|7485189|pir||G71446 hypothetical protein -
Arabidopsis thaliana gi|2245127|emb|CAB10548.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268520|emb|CAB78771.1| hypothetical protein
[Arabidopsis thaliana]
Length = 297
Score = 73.9 bits (180), Expect = 9e-13
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = -3
Query: 487 EDCESAHVDPVRVAAARPKCRGCERRVASVVVLPCRHMCICAECD-AHFRACPVCLTLKN 311
ED ES +VDP R+ P CR C R+ A+V+ LPC+H+ +C CD R CP+CL +K
Sbjct: 231 EDAESVYVDPERIELIGPSCRICRRKSATVMALPCQHLILCNGCDVGAVRVCPICLAVKT 290
Query: 310 STVEVL 293
S VEVL
Sbjct: 291 SGVEVL 296
>gb|AAM91645.1| unknown protein [Arabidopsis thaliana]
Length = 314
Score = 73.9 bits (180), Expect = 9e-13
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = -3
Query: 487 EDCESAHVDPVRVAAARPKCRGCERRVASVVVLPCRHMCICAECD-AHFRACPVCLTLKN 311
ED ES +VDP R+ P CR C R+ A+V+ LPC+H+ +C CD R CP+CL +K
Sbjct: 248 EDAESVYVDPERIELIGPSCRICRRKSATVMALPCQHLILCNGCDVGAVRVCPICLAVKT 307
Query: 310 STVEVL 293
S VEVL
Sbjct: 308 SGVEVL 313
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,388,965
Number of Sequences: 1393205
Number of extensions: 9888469
Number of successful extensions: 40607
Number of sequences better than 10.0: 377
Number of HSP's better than 10.0 without gapping: 34594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39949
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
