Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009348A_C01 KMC009348A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563819.1| expressed protein; protein id: At1g08480.1, sup... 36 0.28
ref|NP_473044.1| hypothetical protein [Plasmodium falciparum 3D7... 34 1.1
ref|NP_701316.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.4
ref|NP_701249.1| reticulocyte binding protein, putative [Plasmod... 31 9.1
>ref|NP_563819.1| expressed protein; protein id: At1g08480.1, supported by cDNA:
gi_15450426, supported by cDNA: gi_16974434 [Arabidopsis
thaliana] gi|15450427|gb|AAK96507.1| At1g08480/T27G7_10
[Arabidopsis thaliana] gi|16974435|gb|AAL31221.1|
At1g08480/T27G7_10 [Arabidopsis thaliana]
Length = 142
Score = 36.2 bits (82), Expect = 0.28
Identities = 16/29 (55%), Positives = 18/29 (61%)
Frame = -2
Query: 545 GVGLFFLPRDTFRWTFEHEIANQTLQLYR 459
G L FL F WTF E+AN TLQLY+
Sbjct: 95 GAALSFLGGGVFGWTFGQEVANHTLQLYK 123
>ref|NP_473044.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7494302|pir||E71611 hypothetical protein PFB0580w -
malaria parasite (Plasmodium falciparum)
gi|3845222|gb|AAC71905.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1224
Score = 34.3 bits (77), Expect = 1.1
Identities = 21/66 (31%), Positives = 30/66 (44%)
Frame = -1
Query: 420 WRANSEENHSRNRIGDCYFTCLLTNYRR*KKNPCSIRWNLKKIRALHGQFSNSSNSSIFS 241
W+ E+N RN + + NY K+N + KIR L+ F N+ N
Sbjct: 419 WKDEDEKNDCRNEYDEYFQKKKKYNYLLPKENEKD-KSTKGKIRELYNNFKNTLNKLCHE 477
Query: 240 IFFNTF 223
IFFN+F
Sbjct: 478 IFFNSF 483
>ref|NP_701316.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496384|gb|AAN36040.1|AE014843_4 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 660
Score = 32.0 bits (71), Expect = 5.4
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = -1
Query: 411 NSEENHSRNRIGDCYFTCLLTN--YRR*KKNPCS-IRWNLKKIRALHGQFSNSSNSSIF- 244
NS ENHS +R CY T LL YR+ +N I +NL F+N+ S F
Sbjct: 59 NSLENHSVDREQICYSTKLLNKSPYRKLSENKIDLINYNL--------SFNNNIKSDCFK 110
Query: 243 SIFFNTFNMH-LFCSS 199
+ +F+T N + LF SS
Sbjct: 111 NTYFDTVNKYNLFLSS 126
>ref|NP_701249.1| reticulocyte binding protein, putative [Plasmodium falciparum 3D7]
gi|23496315|gb|AAN35973.1|AE014841_56 reticulocyte
binding protein, putative [Plasmodium falciparum 3D7]
Length = 661
Score = 31.2 bits (69), Expect = 9.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 200 DEQNKCILKVLKKIEKIEELEELEN 274
D + KCIL +KIEK E+ E++EN
Sbjct: 422 DSEKKCILPECEKIEKCEKYEKIEN 446
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,206,013
Number of Sequences: 1393205
Number of extensions: 8817569
Number of successful extensions: 18929
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18884
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
