Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009345A_C01 KMC009345A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181700.1| putative heat shock transcription factor; prote... 66 3e-10
gb|AAN77190.1| unknown [Choristoneura fumiferana granulovirus] 42 0.004
pir||S59541 heat shock transcription factor HSF29 - soybean (fra... 40 0.021
dbj|BAA83710.1| heat shock factor [Nicotiana tabacum] 39 0.035
sp|P22335|HSF2_LYCPE HEAT SHOCK FACTOR PROTEIN HSF24 (HEAT SHOCK... 39 0.060
>ref|NP_181700.1| putative heat shock transcription factor; protein id: At2g41690.1
[Arabidopsis thaliana] gi|7485002|pir||T00825 probable
heat shock transcription factor At2g41690 [imported] -
Arabidopsis thaliana gi|2618703|gb|AAB84350.1| putative
heat shock transcription factor [Arabidopsis thaliana]
Length = 244
Score = 65.9 bits (159), Expect = 3e-10
Identities = 35/78 (44%), Positives = 52/78 (65%), Gaps = 7/78 (8%)
Frame = -2
Query: 569 DPRSSSTSSSSGLTSLVNENHRLKKENGVLNCELTNMKRKCRDLLDLVAKY-------SS 411
D +SS+TSSS T+L++EN LK EN +L+CEL K+KC+ L++LV +Y +
Sbjct: 167 DQQSSATSSSFVYTALLDENKCLKNENELLSCELGKTKKKCKQLMELVERYRGEDEDATD 226
Query: 410 HAKEEEDERPMLFGVRLD 357
+ +EEDE LFGV+L+
Sbjct: 227 ESDDEEDEGLKLFGVKLE 244
>gb|AAN77190.1| unknown [Choristoneura fumiferana granulovirus]
Length = 244
Score = 42.4 bits (98), Expect = 0.004
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Frame = +1
Query: 361 SLTPNSIGLSSSS------SFACEEYLATKSSRSLHFLFIFVSSQFNTPFSFLSRWFSFT 522
S+ NS+ +SS S SF+ ++ +KSS+S +F+F+F S FN FSF FSF+
Sbjct: 7 SVPSNSVFVSSKSFFKFVFSFSNFVFVFSKSSKSSNFVFVFSKSSFNVVFSFFKFVFSFS 66
Query: 523 RLV 531
V
Sbjct: 67 NFV 69
Score = 31.2 bits (69), Expect = 9.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 448 HFLFIFVSSQFNTPFSFLSRWFSF 519
+F+F+F S FN FSFLS +F F
Sbjct: 221 NFVFVFSKSSFNVVFSFLSLYFFF 244
>pir||S59541 heat shock transcription factor HSF29 - soybean (fragment)
gi|671866|emb|CAA87075.1| heat shock transcription
factor 29 [Glycine max]
Length = 298
Score = 40.0 bits (92), Expect = 0.021
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = -2
Query: 551 TSSSSGLTSLVNENHRLKKENGVLNCELTNMKRKCRDLLDLVAKYSSHAKEEEDE 387
T+S + L++EN RL+KEN L+ EL+ +K C ++L L+ Y+S ++ E
Sbjct: 118 TTSCTTAPELLDENERLRKENMQLSNELSQLKGLCNNILALMTNYASGFSRQQLE 172
>dbj|BAA83710.1| heat shock factor [Nicotiana tabacum]
Length = 292
Score = 39.3 bits (90), Expect = 0.035
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = -2
Query: 569 DPRSSSTSSSSGLTSLVNENHRLKKENGVLNCELTNMKRKCRDLLDLVAKY 417
+P S T S L +EN +LKK+N +L+ EL K++C +L+ + +Y
Sbjct: 139 NPGSVDTPGKSQFADLSDENEKLKKDNQMLSSELAQAKKQCDELVAFLNQY 189
>sp|P22335|HSF2_LYCPE HEAT SHOCK FACTOR PROTEIN HSF24 (HEAT SHOCK TRANSCRIPTION FACTOR
24) (HSTF 24) (HEAT STRESS TRANSCRIPTION FACTOR)
gi|100267|pir||S12361 heat shock transcription factor
HSF24 - Peruvian tomato gi|19488|emb|CAA39034.1| heat
stress transcription factor [Lycopersicon peruvianum]
Length = 301
Score = 38.5 bits (88), Expect = 0.060
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = -2
Query: 539 SGLTSLVNENHRLKKENGVLNCELTNMKRKCRDLLDLVAKY 417
S T L +EN +LKK+N +L+ EL K++C +L+ +++Y
Sbjct: 150 SQFTDLSDENEKLKKDNQMLSSELVQAKKQCNELVAFLSQY 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,409,182
Number of Sequences: 1393205
Number of extensions: 8837332
Number of successful extensions: 21883
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 20941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21820
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
