Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009331A_C01 KMC009331A_c01
(687 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM66025.1| unknown [Arabidopsis thaliana] 152 4e-36
ref|NP_566251.1| mitochondrial carrier protein family; protein i... 152 4e-36
ref|NP_198104.1| mitochondrial carrier protein family; protein i... 149 4e-35
gb|EAA04680.1| agCP3718 [Anopheles gambiae str. PEST] 67 2e-10
ref|NP_181526.1| 36kDa-peroxisomal membrane protein (PMP36); pro... 64 2e-09
>gb|AAM66025.1| unknown [Arabidopsis thaliana]
Length = 322
Score = 152 bits (384), Expect = 4e-36
Identities = 79/127 (62%), Positives = 97/127 (76%), Gaps = 1/127 (0%)
Frame = -2
Query: 686 KTDTKSSPEALSSFSAFMLGAVSKCAATCLTYPAIRCKVMIQAADSDDDKRTEA-ERKAQ 510
K + SSP LS+F AF+LGAVSK AT LTYPAIRCKVMIQAAD + T+ R+ +
Sbjct: 192 KAENGSSPVVLSAFMAFVLGAVSKSVATVLTYPAIRCKVMIQAADESKENETKKPRRRTR 251
Query: 509 RTISGALYTIWRREGLLGFFNGLQAQILKTVLSSALLMMVKEKITKSSWILMLMIGRLLS 330
+TI G +Y IWR+EG+LGFF GLQAQILKTVLSSALL+M+KEKIT ++WIL+L I R L
Sbjct: 252 KTIPGVVYAIWRKEGMLGFFKGLQAQILKTVLSSALLLMIKEKITATTWILILAIRRTLF 311
Query: 329 VKHPKLK 309
+ + K K
Sbjct: 312 LTNTKGK 318
>ref|NP_566251.1| mitochondrial carrier protein family; protein id: At3g05290.1,
supported by cDNA: 7124., supported by cDNA: gi_15081796
[Arabidopsis thaliana]
gi|6729039|gb|AAF27035.1|AC009177_25 unknown protein
[Arabidopsis thaliana] gi|15081797|gb|AAK82553.1|
AT3g05290/T12H1_26 [Arabidopsis thaliana]
gi|23507743|gb|AAN38675.1| At3g05290/T12H1_26
[Arabidopsis thaliana]
Length = 322
Score = 152 bits (384), Expect = 4e-36
Identities = 79/127 (62%), Positives = 97/127 (76%), Gaps = 1/127 (0%)
Frame = -2
Query: 686 KTDTKSSPEALSSFSAFMLGAVSKCAATCLTYPAIRCKVMIQAADSDDDKRTEA-ERKAQ 510
K + SSP LS+F AF+LGAVSK AT LTYPAIRCKVMIQAAD + T+ R+ +
Sbjct: 192 KAENGSSPVVLSAFMAFVLGAVSKSVATVLTYPAIRCKVMIQAADESKENETKKPRRRTR 251
Query: 509 RTISGALYTIWRREGLLGFFNGLQAQILKTVLSSALLMMVKEKITKSSWILMLMIGRLLS 330
+TI G +Y IWR+EG+LGFF GLQAQILKTVLSSALL+M+KEKIT ++WIL+L I R L
Sbjct: 252 KTIPGVVYAIWRKEGMLGFFKGLQAQILKTVLSSALLLMIKEKITATTWILILAIRRTLF 311
Query: 329 VKHPKLK 309
+ + K K
Sbjct: 312 LTNTKGK 318
>ref|NP_198104.1| mitochondrial carrier protein family; protein id: At5g27520.1,
supported by cDNA: 20865., supported by cDNA:
gi_17380871 [Arabidopsis thaliana]
gi|17380872|gb|AAL36248.1| unknown protein [Arabidopsis
thaliana] gi|21689661|gb|AAM67452.1| unknown protein
[Arabidopsis thaliana]
Length = 321
Score = 149 bits (376), Expect = 4e-35
Identities = 79/128 (61%), Positives = 99/128 (76%), Gaps = 1/128 (0%)
Frame = -2
Query: 686 KTDTKSSPEALSSFSAFMLGAVSKCAATCLTYPAIRCKVMIQAADSDDDKRTEAERKA-Q 510
K++ SSP LS+F AF+LGAVSK AAT +TYPAIRCKVMIQAAD + + RK +
Sbjct: 194 KSNKDSSPVVLSAFMAFVLGAVSKSAATVITYPAIRCKVMIQAADDSKENEAKKPRKRIR 253
Query: 509 RTISGALYTIWRREGLLGFFNGLQAQILKTVLSSALLMMVKEKITKSSWILMLMIGRLLS 330
+TI G +Y IW++EG+LGFF GLQAQILKTVLSSALL+M+KEKIT ++WIL+L I R L
Sbjct: 254 KTIPGVVYAIWKKEGILGFFKGLQAQILKTVLSSALLLMIKEKITATTWILILAI-RTLF 312
Query: 329 VKHPKLKA 306
V +LK+
Sbjct: 313 VTKARLKS 320
>gb|EAA04680.1| agCP3718 [Anopheles gambiae str. PEST]
Length = 325
Score = 67.4 bits (163), Expect = 2e-10
Identities = 42/120 (35%), Positives = 68/120 (56%)
Frame = -2
Query: 680 DTKSSPEALSSFSAFMLGAVSKCAATCLTYPAIRCKVMIQAADSDDDKRTEAERKAQRTI 501
+ KSSP A++ FS +GAV+K AT LTYP + ++ ++D +
Sbjct: 213 NAKSSPSAITFFS---IGAVAKMIATVLTYPLQLVQTKLRHGNTDRSLNLPPNVDTVQM- 268
Query: 500 SGALYTIWRREGLLGFFNGLQAQILKTVLSSALLMMVKEKITKSSWILMLMIGRLLSVKH 321
L I +R+G+ G F GL+A++L+TVL++AL+ M EKI + L+L G + +V+H
Sbjct: 269 ---LLIILKRQGVAGLFRGLEAKLLQTVLTAALMFMAYEKIARFVTSLLLTKGGVTAVRH 325
>ref|NP_181526.1| 36kDa-peroxisomal membrane protein (PMP36); protein id:
At2g39970.1, supported by cDNA: 5504., supported by
cDNA: gi_14532467, supported by cDNA: gi_15146341
[Arabidopsis thaliana] gi|25408651|pir||F84823 probable
peroxisomal membrane carrier protein [imported] -
Arabidopsis thaliana gi|2088650|gb|AAB95282.1| putative
peroxisomal membrane carrier protein [Arabidopsis
thaliana] gi|14532468|gb|AAK63962.1| At2g39970/T28M21.13
[Arabidopsis thaliana] gi|15146342|dbj|BAB62814.1|
36kDa-peroxisomal membrane protein (PMP36) [Arabidopsis
thaliana] gi|27764928|gb|AAO23585.1| At2g39970/T28M21.13
[Arabidopsis thaliana]
Length = 331
Score = 63.9 bits (154), Expect = 2e-09
Identities = 34/101 (33%), Positives = 61/101 (59%)
Frame = -2
Query: 656 LSSFSAFMLGAVSKCAATCLTYPAIRCKVMIQAADSDDDKRTEAERKAQRTISGALYTIW 477
+++ F+LGAV+K AT TYP + K +QA T +R+ + A+ +
Sbjct: 229 VTALETFLLGAVAKLGATVTTYPLLVVKSRLQAKQVT----TGDKRQQYKGTLDAILKMI 284
Query: 476 RREGLLGFFNGLQAQILKTVLSSALLMMVKEKITKSSWILM 354
R EGL GF+ G+ +I+++VL++A+L M+KE++ K + +L+
Sbjct: 285 RYEGLYGFYKGMSTKIVQSVLAAAVLFMIKEELVKGAKLLL 325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,399,727
Number of Sequences: 1393205
Number of extensions: 11097984
Number of successful extensions: 28363
Number of sequences better than 10.0: 160
Number of HSP's better than 10.0 without gapping: 27534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28334
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
