Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009290A_C01 KMC009290A_c01
(763 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567245.1| bHLH protein; protein id: At4g02590.1, supporte... 124 2e-27
gb|AAM65759.1| putative lipoamide dehydrogenase [Arabidopsis tha... 124 2e-27
gb|AAM10948.1|AF488592_1 putative bHLH transcription factor [Ara... 124 2e-27
pir||B86161 F10O3.14 protein - Arabidopsis thaliana gi|4587574|g... 110 3e-23
ref|NP_563672.1| bHLH protein; protein id: At1g03040.1, supporte... 110 3e-23
>ref|NP_567245.1| bHLH protein; protein id: At4g02590.1, supported by cDNA: 4346.,
supported by cDNA: gi_13605858, supported by cDNA:
gi_20127057 [Arabidopsis thaliana]
gi|7486850|pir||T01090 hypothetical protein T10P11.13 -
Arabidopsis thaliana gi|3892050|gb|AAC78259.1|AAC78259
hypothetical protein [Arabidopsis thaliana]
gi|7269019|emb|CAB80752.1| hypothetical protein
[Arabidopsis thaliana]
gi|13605859|gb|AAK32915.1|AF367328_1 AT4g02590/T10P11_13
[Arabidopsis thaliana] gi|23506061|gb|AAN28890.1|
At4g02590/T10P11_13 [Arabidopsis thaliana]
Length = 310
Score = 124 bits (310), Expect = 2e-27
Identities = 59/73 (80%), Positives = 65/73 (88%), Gaps = 1/73 (1%)
Frame = -3
Query: 758 GEGGRN-QPAWEKWSNDGTEKQVAKLMEENIGAAMQFLQSKALCIMPISLASAIYQSQPS 582
GEGGR QPAWEKWSNDGTE+QVAKLMEEN+GAAMQ LQSKALC+MPISLA AIY SQP
Sbjct: 237 GEGGRTPQPAWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPP 296
Query: 581 ENSSIVKPETSPP 543
+ SS+VKPE +PP
Sbjct: 297 DTSSVVKPENNPP 309
>gb|AAM65759.1| putative lipoamide dehydrogenase [Arabidopsis thaliana]
Length = 310
Score = 124 bits (310), Expect = 2e-27
Identities = 59/73 (80%), Positives = 65/73 (88%), Gaps = 1/73 (1%)
Frame = -3
Query: 758 GEGGRN-QPAWEKWSNDGTEKQVAKLMEENIGAAMQFLQSKALCIMPISLASAIYQSQPS 582
GEGGR QPAWEKWSNDGTE+QVAKLMEEN+GAAMQ LQSKALC+MPISLA AIY SQP
Sbjct: 237 GEGGRTPQPAWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPP 296
Query: 581 ENSSIVKPETSPP 543
+ SS+VKPE +PP
Sbjct: 297 DTSSVVKPENNPP 309
>gb|AAM10948.1|AF488592_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 310
Score = 124 bits (310), Expect = 2e-27
Identities = 59/73 (80%), Positives = 65/73 (88%), Gaps = 1/73 (1%)
Frame = -3
Query: 758 GEGGRN-QPAWEKWSNDGTEKQVAKLMEENIGAAMQFLQSKALCIMPISLASAIYQSQPS 582
GEGGR QPAWEKWSNDGTE+QVAKLMEEN+GAAMQ LQSKALC+MPISLA AIY SQP
Sbjct: 237 GEGGRTPQPAWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPP 296
Query: 581 ENSSIVKPETSPP 543
+ SS+VKPE +PP
Sbjct: 297 DTSSVVKPENNPP 309
>pir||B86161 F10O3.14 protein - Arabidopsis thaliana
gi|4587574|gb|AAD25805.1|AC006550_13 Contains PF|00010
helix-loop-helix DNA-binding domain. ESTs gb|T45640 and
gb|T22783 come from this gene. [Arabidopsis thaliana]
Length = 297
Score = 110 bits (274), Expect = 3e-23
Identities = 54/67 (80%), Positives = 59/67 (87%), Gaps = 1/67 (1%)
Frame = -3
Query: 740 QPAWEKWSNDGTEKQVAKLMEENIGAAMQFLQSKALCIMPISLASAIYQSQPSE-NSSIV 564
Q WEKWSNDGTE+QVAKLMEEN+GAAMQ LQSKALCIMPISLA AIY SQP + +SSIV
Sbjct: 230 QAVWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCIMPISLAMAIYHSQPPDTSSSIV 289
Query: 563 KPETSPP 543
KPE +PP
Sbjct: 290 KPEMNPP 296
>ref|NP_563672.1| bHLH protein; protein id: At1g03040.1, supported by cDNA:
gi_15450778 [Arabidopsis thaliana]
gi|15450779|gb|AAK96661.1| Unknown protein [Arabidopsis
thaliana] gi|21387097|gb|AAM47952.1| unknown protein
[Arabidopsis thaliana]
gi|21735477|gb|AAL55714.2|AF251692_1 putative
transcription factor BHLH7 [Arabidopsis thaliana]
Length = 302
Score = 110 bits (274), Expect = 3e-23
Identities = 54/67 (80%), Positives = 59/67 (87%), Gaps = 1/67 (1%)
Frame = -3
Query: 740 QPAWEKWSNDGTEKQVAKLMEENIGAAMQFLQSKALCIMPISLASAIYQSQPSE-NSSIV 564
Q WEKWSNDGTE+QVAKLMEEN+GAAMQ LQSKALCIMPISLA AIY SQP + +SSIV
Sbjct: 235 QAVWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCIMPISLAMAIYHSQPPDTSSSIV 294
Query: 563 KPETSPP 543
KPE +PP
Sbjct: 295 KPEMNPP 301
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 690,688,921
Number of Sequences: 1393205
Number of extensions: 15092911
Number of successful extensions: 36401
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 35026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36385
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 36974710344
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
