Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009261A_C01 KMC009261A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196329.1| putative protein; protein id: At5g07120.1 [Arab... 198 5e-50
dbj|BAB10259.1| contains similarity to sorting nexin~gene_id:MQJ... 192 2e-48
ref|NP_200652.2| putative protein; protein id: At5g58440.1, supp... 192 2e-48
dbj|BAB68097.1| B1088C09.3 [Oryza sativa (japonica cultivar-group)] 116 2e-25
ref|XP_147185.1| similar to sorting nexin 4 [Mus musculus] 39 0.060
>ref|NP_196329.1| putative protein; protein id: At5g07120.1 [Arabidopsis thaliana]
gi|11358269|pir||T48483 hypothetical protein T28J14.60 -
Arabidopsis thaliana gi|7546690|emb|CAB87268.1| putative
protein [Arabidopsis thaliana]
Length = 554
Score = 198 bits (503), Expect = 5e-50
Identities = 100/124 (80%), Positives = 117/124 (93%)
Frame = -2
Query: 568 DRSSALLTVQTLLSELSSLQSRAEKLEAASSKIFGGDKSRIRKLEELQETIRVSEDAKHI 389
DRSSALLTVQTLLSELSSL++RAEKLE ASSK+FGGDKSRI+K+EEL+ETI+V+ED+K++
Sbjct: 431 DRSSALLTVQTLLSELSSLEARAEKLEVASSKVFGGDKSRIKKIEELKETIKVTEDSKNV 490
Query: 388 AIRE*ERIKENNRSELERLDRERQADFLNMLKGFVVNQVGYAEKIANVWTKSAEETRKYV 209
AIRE E+IKENN SE+ERLDRER+ADFLNM+KGFV NQVGYAEKIANVWTK AEETR+Y
Sbjct: 491 AIREYEQIKENNWSEVERLDRERRADFLNMMKGFVANQVGYAEKIANVWTKVAEETRQYD 550
Query: 208 NEST 197
ES+
Sbjct: 551 RESS 554
>dbj|BAB10259.1| contains similarity to sorting nexin~gene_id:MQJ2.4 [Arabidopsis
thaliana]
Length = 566
Score = 192 bits (488), Expect = 2e-48
Identities = 97/122 (79%), Positives = 112/122 (91%)
Frame = -2
Query: 568 DRSSALLTVQTLLSELSSLQSRAEKLEAASSKIFGGDKSRIRKLEELQETIRVSEDAKHI 389
DRSSALLTVQTLLSEL SLQ+R EKLEAASSK+FGGDKSRIRK+EEL+ETI+V+EDAK++
Sbjct: 441 DRSSALLTVQTLLSELPSLQTRVEKLEAASSKVFGGDKSRIRKIEELKETIKVTEDAKNV 500
Query: 388 AIRE*ERIKENNRSELERLDRERQADFLNMLKGFVVNQVGYAEKIANVWTKSAEETRKYV 209
AI+ ERIKENNRSE+ERLDRER+ADF+NM+KGFVVNQVGYAEK+ NVW K AEET +Y
Sbjct: 501 AIKGYERIKENNRSEVERLDRERRADFMNMMKGFVVNQVGYAEKMGNVWAKVAEETSQYD 560
Query: 208 NE 203
E
Sbjct: 561 RE 562
>ref|NP_200652.2| putative protein; protein id: At5g58440.1, supported by cDNA:
gi_20466617 [Arabidopsis thaliana]
gi|20466618|gb|AAM20626.1| putative protein [Arabidopsis
thaliana] gi|23198154|gb|AAN15604.1| putative protein
[Arabidopsis thaliana]
Length = 587
Score = 192 bits (488), Expect = 2e-48
Identities = 97/122 (79%), Positives = 112/122 (91%)
Frame = -2
Query: 568 DRSSALLTVQTLLSELSSLQSRAEKLEAASSKIFGGDKSRIRKLEELQETIRVSEDAKHI 389
DRSSALLTVQTLLSEL SLQ+R EKLEAASSK+FGGDKSRIRK+EEL+ETI+V+EDAK++
Sbjct: 462 DRSSALLTVQTLLSELPSLQTRVEKLEAASSKVFGGDKSRIRKIEELKETIKVTEDAKNV 521
Query: 388 AIRE*ERIKENNRSELERLDRERQADFLNMLKGFVVNQVGYAEKIANVWTKSAEETRKYV 209
AI+ ERIKENNRSE+ERLDRER+ADF+NM+KGFVVNQVGYAEK+ NVW K AEET +Y
Sbjct: 522 AIKGYERIKENNRSEVERLDRERRADFMNMMKGFVVNQVGYAEKMGNVWAKVAEETSQYD 581
Query: 208 NE 203
E
Sbjct: 582 RE 583
>dbj|BAB68097.1| B1088C09.3 [Oryza sativa (japonica cultivar-group)]
Length = 577
Score = 116 bits (291), Expect = 2e-25
Identities = 61/124 (49%), Positives = 89/124 (71%)
Frame = -2
Query: 568 DRSSALLTVQTLLSELSSLQSRAEKLEAASSKIFGGDKSRIRKLEELQETIRVSEDAKHI 389
DR++ALL VQ+L +L L ++A KLE+ SS+ G ++ R +K+EEL+ETIR +EDAK
Sbjct: 454 DRANALLRVQSLSGDLFLLHTQAAKLESVSSRGMGQERLRYQKIEELKETIRKTEDAKGN 513
Query: 388 AIRE*ERIKENNRSELERLDRERQADFLNMLKGFVVNQVGYAEKIANVWTKSAEETRKYV 209
A +E E IKENN +E+ R ++E++ + MLKGFV NQV Y+E I+++WTK AEET Y
Sbjct: 514 ARQEYELIKENNMNEIIRFNKEKRHGLVEMLKGFVRNQVSYSEHISSIWTKVAEETTGYT 573
Query: 208 NEST 197
+ +
Sbjct: 574 GKGS 577
>ref|XP_147185.1| similar to sorting nexin 4 [Mus musculus]
Length = 403
Score = 38.5 bits (88), Expect = 0.060
Identities = 25/102 (24%), Positives = 47/102 (45%), Gaps = 2/102 (1%)
Frame = -2
Query: 526 ELSSLQSRAEKLEAASSKIFGGD--KSRIRKLEELQETIRVSEDAKHIAIRE*ERIKENN 353
EL++ R L+ ++K+FG + + R +++ L+E I E E +N
Sbjct: 297 ELATGTVRTFSLKGMTTKLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVKNA 356
Query: 352 RSELERLDRERQADFLNMLKGFVVNQVGYAEKIANVWTKSAE 227
+++ER ++ D L + V Q+ +K VWT + E
Sbjct: 357 WADIERFKEQKNRDLKEALISYAVMQISMCKKGIQVWTNAKE 398
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,589,359
Number of Sequences: 1393205
Number of extensions: 8172429
Number of successful extensions: 23554
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 22571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23461
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
