Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009251A_C01 KMC009251A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172993.1| hypothetical protein; protein id: At1g15410.1, ... 118 4e-26
dbj|BAB90623.1| B1110C07.24 [Oryza sativa (japonica cultivar-gro... 107 9e-23
ref|NP_762629.1| Unknown [Vibrio vulnificus CMCP6] gi|27358670|g... 32 4.7
ref|NP_692868.1| hypothetical protein [Oceanobacillus iheyensis ... 32 6.1
ref|NP_055729.1| centaurin, gamma 2 [Homo sapiens] gi|27923750|s... 31 8.0
>ref|NP_172993.1| hypothetical protein; protein id: At1g15410.1, supported by cDNA:
gi_18176343 [Arabidopsis thaliana]
gi|5103839|gb|AAD39669.1|AC007591_34 Is a member of the
PF|01177 Aspartate-glutamate racemase family. EST
gb|T43554 comes from this gene. [Arabidopsis thaliana]
gi|26983862|gb|AAN86183.1| unknown protein [Arabidopsis
thaliana]
Length = 330
Score = 118 bits (296), Expect = 4e-26
Identities = 57/87 (65%), Positives = 70/87 (79%)
Frame = -3
Query: 407 GFEVVLLDKETEEHTLVPAVESLSGKDIEGARNLLRIAIHVLLVRAVNVVTLASDDLLGF 228
GFE VL DK T EHT++P++E++ KD+EGARNLLRIA+ VLLV+AVNVV L SD++
Sbjct: 240 GFEAVLPDKATMEHTVIPSIEAMKRKDMEGARNLLRIALQVLLVQAVNVVMLGSDEMRDL 299
Query: 227 LPHNDPLLMKCIDPMGALARSTIHWAE 147
LP +DPLL KC+DPM ALARS I WAE
Sbjct: 300 LPGDDPLLKKCVDPMDALARSAIKWAE 326
>dbj|BAB90623.1| B1110C07.24 [Oryza sativa (japonica cultivar-group)]
Length = 240
Score = 107 bits (267), Expect = 9e-23
Identities = 52/84 (61%), Positives = 65/84 (76%)
Frame = -3
Query: 410 QGFEVVLLDKETEEHTLVPAVESLSGKDIEGARNLLRIAIHVLLVRAVNVVTLASDDLLG 231
QGFEV+L DK + EHT++PA+ + D+EGARNLLRI++ V+ VRAVN + LASDD +G
Sbjct: 79 QGFEVLLPDKASLEHTVLPAIGAFRRGDMEGARNLLRISLQVMFVRAVNTIILASDDFVG 138
Query: 230 FLPHNDPLLMKCIDPMGALARSTI 159
LP +DPLL KCIDPM AL R TI
Sbjct: 139 ILPDDDPLLKKCIDPMDALVRETI 162
>ref|NP_762629.1| Unknown [Vibrio vulnificus CMCP6]
gi|27358670|gb|AAO07619.1|AE016810_122 Unknown [Vibrio
vulnificus CMCP6]
Length = 341
Score = 32.0 bits (71), Expect = 4.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 176 LARSTIHWAETTAKVLHKL*YSLLPKSWHHD 84
L +S+ HW+ ++H+ ++LL + WHHD
Sbjct: 205 LDKSSEHWSRLAEHIIHESAHNLLYQLWHHD 235
>ref|NP_692868.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
gi|22777631|dbj|BAC13903.1| hypothetical conserved
protein [Oceanobacillus iheyensis]
Length = 209
Score = 31.6 bits (70), Expect = 6.1
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = -3
Query: 374 EEHTLVPAVESLSGKDI----EGARNLLRIAIHVLLVRAVNVVTLASDDLLGFLPHNDPL 207
++H + V LS KD+ G ++L I +H+++ R N+ DDLL HN L
Sbjct: 112 DDHACLTGV--LSRKDLLRTSMGHQDLTSIPVHIIMTRMPNITVCRRDDLLIDAAHN--L 167
Query: 206 LMKCID 189
+ K ID
Sbjct: 168 ISKQID 173
>ref|NP_055729.1| centaurin, gamma 2 [Homo sapiens] gi|27923750|sp|Q9UPQ3|CEG2_HUMAN
Centaurin gamma 2 gi|5689535|dbj|BAA83051.1| KIAA1099
protein [Homo sapiens]
gi|15625584|gb|AAL04172.1|AF413078_1 centaurin gamma2
[Homo sapiens] gi|28374467|gb|AAK56506.1| GTP-binding
and GTPase-activating protein 1 [Homo sapiens]
Length = 804
Score = 31.2 bits (69), Expect = 8.0
Identities = 26/115 (22%), Positives = 51/115 (43%), Gaps = 23/115 (20%)
Frame = +1
Query: 223 GRKPSRSSDARVTTFTALTKRTWIAILSKFLAPSMSFPDKDSTAGTNVCSSVSLSSNTTS 402
G++P R++ A + T LSK ++ P+ D+ G +VCSS S+SS T+
Sbjct: 407 GKRPPRATSACAPISSPKTNG-----LSKDMSSLHISPNSDTGLGDSVCSSPSISSTTSP 461
Query: 403 N----P*SHEDKIQH-------------------DYQTNIDLILYTIEPRTFNFQ 498
P H ++ +H + + N + I+ ++ +T++F+
Sbjct: 462 KLDPPPSPHANRKKHRRKKSTSNFKADGLSGTAEEQEENFEFIIVSLTGQTWHFE 516
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,154,670
Number of Sequences: 1393205
Number of extensions: 9657586
Number of successful extensions: 23190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23187
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
