Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009116A_C01 KMC009116A_c01
(463 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00068178.1| hypothetical protein [Microbulbifer degradans... 35 0.49
dbj|BAC16199.1| hypothetical protein~similar to Oryza sativa chr... 32 4.2
gb|AAK27803.1|AC022457_6 hypothetical protein [Oryza sativa (jap... 32 4.2
dbj|BAB90209.1| B1078G07.31 [Oryza sativa (japonica cultivar-gro... 30 9.3
>ref|ZP_00068178.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 1029
Score = 34.7 bits (78), Expect = 0.49
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +1
Query: 178 HLKKYISIMTTKKLCG*TVNAKGDSPSLSLADLALKALLSNYDMLL 315
H+ K +SI+T +++ V AKGD P +L +L+L+A LS+ D+ L
Sbjct: 803 HMIKGLSILTAERI----VLAKGDKPFTTLKELSLRAQLSSADLQL 844
>dbj|BAC16199.1| hypothetical protein~similar to Oryza sativa chromosome
10,OSJNBa0006L06.20 [Oryza sativa (japonica
cultivar-group)]
Length = 367
Score = 31.6 bits (70), Expect = 4.2
Identities = 13/61 (21%), Positives = 28/61 (45%)
Frame = -2
Query: 462 RWTDDMDRMLLNAFSEEAAKGHRCQGSWTIEAYANVLQALQIAISPTMMKQHIIIRKKGL 283
RW+ M L+ ++ G R Q +W+ EA+ N++ L + + +++ L
Sbjct: 52 RWSHQMKMFLIELLTDHDVPGFRTQNAWSKEAWTNIVCRLNTKFGTSFTTNQVKQKEQDL 111
Query: 282 E 280
+
Sbjct: 112 K 112
>gb|AAK27803.1|AC022457_6 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 367
Score = 31.6 bits (70), Expect = 4.2
Identities = 13/61 (21%), Positives = 28/61 (45%)
Frame = -2
Query: 462 RWTDDMDRMLLNAFSEEAAKGHRCQGSWTIEAYANVLQALQIAISPTMMKQHIIIRKKGL 283
RW+ M L+ ++ G R Q +W+ EA+ N++ L + + +++ L
Sbjct: 52 RWSHQMKMFLIELLTDHDVPGFRTQNAWSKEAWTNIVCRLNTKFGTSFTTNQVKQKEQDL 111
Query: 282 E 280
+
Sbjct: 112 K 112
>dbj|BAB90209.1| B1078G07.31 [Oryza sativa (japonica cultivar-group)]
gi|21952836|dbj|BAC06251.1| hypothetical protein~similar
to Oryza sativa chromosome 10,OSJNBa0034A02.15 [Oryza
sativa (japonica cultivar-group)]
Length = 568
Score = 30.4 bits (67), Expect = 9.3
Identities = 18/61 (29%), Positives = 30/61 (48%), Gaps = 1/61 (1%)
Frame = -2
Query: 459 WTDDMDRMLLNAFSEEAAKGHRCQGSWTIEAYANVLQALQIAIS-PTMMKQHIIIRKKGL 283
W ++ L++ E +RCQ WT EA+ V++ + TM KQ I ++K L
Sbjct: 305 WNPGPEKALVDLLHEHNNPHYRCQNGWTSEAWNKVVKEFRDRHPYVTMNKQQIQDKEKEL 364
Query: 282 E 280
+
Sbjct: 365 K 365
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,677,156
Number of Sequences: 1393205
Number of extensions: 7300747
Number of successful extensions: 12169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12166
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
