Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009091A_C01 KMC009091A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564985.1| expressed protein; protein id: At1g70160.1, sup... 147 8e-35
gb|AAL09800.1| AT4g27020/F10M23_360 [Arabidopsis thaliana] 110 8e-24
ref|NP_194432.1| putative protein; protein id: At4g27020.1, supp... 110 8e-24
gb|AAK68839.1| Unknown protein [Arabidopsis thaliana] 109 2e-23
ref|NP_200298.1| putative protein; protein id: At5g54870.1, supp... 109 2e-23
>ref|NP_564985.1| expressed protein; protein id: At1g70160.1, supported by cDNA:
gi_13430575, supported by cDNA: gi_15293160 [Arabidopsis
thaliana] gi|13430576|gb|AAK25910.1|AF360200_1 unknown
protein [Arabidopsis thaliana]
gi|15293161|gb|AAK93691.1| unknown protein [Arabidopsis
thaliana]
Length = 523
Score = 147 bits (370), Expect = 8e-35
Identities = 66/94 (70%), Positives = 78/94 (82%)
Frame = +2
Query: 209 LTVPFRVNDVLPVLPRSISWPVLNNFHSAVDLLPSFVGSVTPDNATVEWKGACFNDNEAR 388
L VPF VNDVLP+LPR +SWPVLN+FH+AVDLLP F+GSVTP+N ++EWKGACFN NEAR
Sbjct: 25 LKVPFSVNDVLPMLPRQVSWPVLNSFHNAVDLLPVFIGSVTPNNVSIEWKGACFNGNEAR 84
Query: 389 LEFTAGDRNDSALGGAVLYLKTEDAHSWSCMDLY 490
L+ T DR+ LGG VL+LKT AHS +CMDLY
Sbjct: 85 LDITGSDRDVPGLGGGVLHLKTSKAHSLTCMDLY 118
>gb|AAL09800.1| AT4g27020/F10M23_360 [Arabidopsis thaliana]
Length = 222
Score = 110 bits (275), Expect = 8e-24
Identities = 47/92 (51%), Positives = 68/92 (73%)
Frame = +2
Query: 215 VPFRVNDVLPVLPRSISWPVLNNFHSAVDLLPSFVGSVTPDNATVEWKGACFNDNEARLE 394
+PF D+LP+ PR +SWPV+N+ ++AVDLLP+F+GS + N VEWKGACF +N+A LE
Sbjct: 27 LPFHPRDLLPLFPRQVSWPVVNSLNTAVDLLPTFIGSASVRNDAVEWKGACFYENKAWLE 86
Query: 395 FTAGDRNDSALGGAVLYLKTEDAHSWSCMDLY 490
+++ S GG L++K + AHSW+CMD+Y
Sbjct: 87 L--NNKSGSEFGGGTLHIKVDKAHSWTCMDIY 116
>ref|NP_194432.1| putative protein; protein id: At4g27020.1, supported by cDNA:
gi_15982906, supported by cDNA: gi_18650638 [Arabidopsis
thaliana] gi|7452424|pir||T04825 hypothetical protein
F10M23.360 - Arabidopsis thaliana
gi|4455225|emb|CAB36548.1| putative protein [Arabidopsis
thaliana] gi|7269555|emb|CAB79557.1| putative protein
[Arabidopsis thaliana] gi|18650639|gb|AAL75889.1|
AT4g27020/F10M23_360 [Arabidopsis thaliana]
gi|23505979|gb|AAN28849.1| At4g27020/F10M23_360
[Arabidopsis thaliana]
Length = 523
Score = 110 bits (275), Expect = 8e-24
Identities = 47/92 (51%), Positives = 68/92 (73%)
Frame = +2
Query: 215 VPFRVNDVLPVLPRSISWPVLNNFHSAVDLLPSFVGSVTPDNATVEWKGACFNDNEARLE 394
+PF D+LP+ PR +SWPV+N+ ++AVDLLP+F+GS + N VEWKGACF +N+A LE
Sbjct: 27 LPFHPRDLLPLFPRQVSWPVVNSLNTAVDLLPTFIGSASVRNDAVEWKGACFYENKAWLE 86
Query: 395 FTAGDRNDSALGGAVLYLKTEDAHSWSCMDLY 490
+++ S GG L++K + AHSW+CMD+Y
Sbjct: 87 L--NNKSGSEFGGGTLHIKVDKAHSWTCMDIY 116
>gb|AAK68839.1| Unknown protein [Arabidopsis thaliana]
Length = 318
Score = 109 bits (272), Expect = 2e-23
Identities = 47/91 (51%), Positives = 66/91 (71%)
Frame = +2
Query: 218 PFRVNDVLPVLPRSISWPVLNNFHSAVDLLPSFVGSVTPDNATVEWKGACFNDNEARLEF 397
PF D+LP LPR +SWP+LN+ + A DLLP+F+G+ + N +V+WKGACF +N A LEF
Sbjct: 36 PFHPRDLLPHLPRQVSWPILNSLYGAADLLPTFIGTASSGNDSVDWKGACFFENTAWLEF 95
Query: 398 TAGDRNDSALGGAVLYLKTEDAHSWSCMDLY 490
+++ S GG L++K + AHSW+CMDLY
Sbjct: 96 --HNKSGSEFGGGTLHIKADKAHSWTCMDLY 124
>ref|NP_200298.1| putative protein; protein id: At5g54870.1, supported by cDNA:
gi_14596222 [Arabidopsis thaliana]
gi|9758267|dbj|BAB08766.1|
gene_id:MBG8.14~pir||T04825~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 531
Score = 109 bits (272), Expect = 2e-23
Identities = 47/91 (51%), Positives = 66/91 (71%)
Frame = +2
Query: 218 PFRVNDVLPVLPRSISWPVLNNFHSAVDLLPSFVGSVTPDNATVEWKGACFNDNEARLEF 397
PF D+LP LPR +SWP+LN+ + A DLLP+F+G+ + N +V+WKGACF +N A LEF
Sbjct: 36 PFHPRDLLPHLPRQVSWPILNSLYGAADLLPTFIGTASSGNDSVDWKGACFFENTAWLEF 95
Query: 398 TAGDRNDSALGGAVLYLKTEDAHSWSCMDLY 490
+++ S GG L++K + AHSW+CMDLY
Sbjct: 96 --HNKSGSEFGGGTLHIKADKAHSWTCMDLY 124
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,109,421
Number of Sequences: 1393205
Number of extensions: 14236050
Number of successful extensions: 226039
Number of sequences better than 10.0: 2703
Number of HSP's better than 10.0 without gapping: 90954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171556
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
