Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009071A_C01 KMC009071A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL51055.2|AF454759_1 beta-carbonic anhydrase [Nicotiana taba... 245 3e-64
sp|P27141|CAHC_TOBAC CARBONIC ANHYDRASE, CHLOROPLAST PRECURSOR (... 244 6e-64
dbj|BAA25639.1| NPCA1 [Nicotiana paniculata] 244 6e-64
pir||T02886 carbonate dehydratase (EC 4.2.1.1), chloroplast - co... 244 8e-64
ref|NP_177198.1| carbonic anhydrase, putative; protein id: At1g7... 226 2e-58
>gb|AAL51055.2|AF454759_1 beta-carbonic anhydrase [Nicotiana tabacum]
Length = 321
Score = 245 bits (626), Expect = 3e-64
Identities = 118/159 (74%), Positives = 141/159 (88%), Gaps = 1/159 (0%)
Frame = +2
Query: 104 KEEMAGESYDEAIASLTKLLSEKADLGAVAAAKIKDLTAE*EDA-GSKPSNPDERIRTGF 280
+EEMA ESY++AIA+L KLLSEK +LG +AAA++ +TAE + + GSKP +P E ++ GF
Sbjct: 62 REEMANESYEQAIAALEKLLSEKGELGPIAAARVDQITAELQSSDGSKPFDPVEHMKAGF 121
Query: 281 VQFKSEKFEKNPDLYGELAKGQSPKCLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVP 460
+ FK+EK+EKNP LYGEL+KGQSPK +VFACSDSRVCPSHILNFQPGEAF+VRNIANMVP
Sbjct: 122 IHFKTEKYEKNPALYGELSKGQSPKYMVFACSDSRVCPSHILNFQPGEAFVVRNIANMVP 181
Query: 461 AFDKTKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIRG 577
A+DKT+YSG GAAIEYAVLHLKVENIVVIGHS CGGI+G
Sbjct: 182 AYDKTRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKG 220
>sp|P27141|CAHC_TOBAC CARBONIC ANHYDRASE, CHLOROPLAST PRECURSOR (CARBONATE DEHYDRATASE)
gi|7436813|pir||T02936 carbonate dehydratase (EC
4.2.1.1) precursor, chloroplast - common tobacco
gi|170219|gb|AAA34065.1| chloroplast carbonic anhydrase
gi|445610|prf||1909357A carbonic anhydrase
Length = 321
Score = 244 bits (623), Expect = 6e-64
Identities = 117/159 (73%), Positives = 141/159 (88%), Gaps = 1/159 (0%)
Frame = +2
Query: 104 KEEMAGESYDEAIASLTKLLSEKADLGAVAAAKIKDLTAE*EDA-GSKPSNPDERIRTGF 280
+EEMA ESY++AIA+L KLLSEK +LG +AAA++ +TAE + + GSKP +P E ++ GF
Sbjct: 62 REEMAKESYEQAIAALEKLLSEKGELGPIAAARVDQITAELQSSDGSKPFDPVEHMKAGF 121
Query: 281 VQFKSEKFEKNPDLYGELAKGQSPKCLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVP 460
+ FK+EK+EKNP LYGEL+KGQSPK +VFACSDSRVCPSH+LNFQPGEAF+VRNIANMVP
Sbjct: 122 IHFKTEKYEKNPALYGELSKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFVVRNIANMVP 181
Query: 461 AFDKTKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIRG 577
A+DKT+YSG GAAIEYAVLHLKVENIVVIGHS CGGI+G
Sbjct: 182 AYDKTRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKG 220
>dbj|BAA25639.1| NPCA1 [Nicotiana paniculata]
Length = 322
Score = 244 bits (623), Expect = 6e-64
Identities = 117/159 (73%), Positives = 141/159 (88%), Gaps = 1/159 (0%)
Frame = +2
Query: 104 KEEMAGESYDEAIASLTKLLSEKADLGAVAAAKIKDLTAE*EDA-GSKPSNPDERIRTGF 280
+EEMA ESY++AIA+L KLLSEK +LG +AAA++ +TAE + + GSKP +P E ++ GF
Sbjct: 63 REEMAKESYEQAIAALEKLLSEKGELGPIAAARVDQITAELQSSDGSKPFDPVEHMKAGF 122
Query: 281 VQFKSEKFEKNPDLYGELAKGQSPKCLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVP 460
+ FK+EK+EKNP LYGEL+KGQSPK +VFACSDSRVCPSH+LNFQPGEAF+VRNIANMVP
Sbjct: 123 IHFKTEKYEKNPALYGELSKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFVVRNIANMVP 182
Query: 461 AFDKTKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIRG 577
A+DKT+YSG GAAIEYAVLHLKVENIVVIGHS CGGI+G
Sbjct: 183 AYDKTRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKG 221
>pir||T02886 carbonate dehydratase (EC 4.2.1.1), chloroplast - common tobacco
(fragment) gi|310921|gb|AAA34057.1| carbonic anhydrase
Length = 264
Score = 244 bits (622), Expect = 8e-64
Identities = 116/159 (72%), Positives = 141/159 (87%), Gaps = 1/159 (0%)
Frame = +2
Query: 104 KEEMAGESYDEAIASLTKLLSEKADLGAVAAAKIKDLTAE*EDA-GSKPSNPDERIRTGF 280
+EEMA ESY++AIA+L KLLSEK +LG +AAA++ +TAE + + GSKP +P E ++ GF
Sbjct: 5 REEMAKESYEQAIAALEKLLSEKGELGPIAAARVDQITAELQSSDGSKPFDPVEHMKAGF 64
Query: 281 VQFKSEKFEKNPDLYGELAKGQSPKCLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVP 460
+ FK+EK+EKNP LYGEL+KGQSPK +VFACSDSRVCPSH+LNFQPGEAF+VRNIANM+P
Sbjct: 65 IHFKTEKYEKNPALYGELSKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFVVRNIANMIP 124
Query: 461 AFDKTKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIRG 577
A+DKT+YSG GAAIEYAVLHLKVENIVVIGHS CGGI+G
Sbjct: 125 AYDKTRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKG 163
>ref|NP_177198.1| carbonic anhydrase, putative; protein id: At1g70410.1, supported by
cDNA: 38715., supported by cDNA: gi_14334469, supported
by cDNA: gi_21280999 [Arabidopsis thaliana]
gi|14334470|gb|AAK59433.1| putative carbonic anhydrase
[Arabidopsis thaliana] gi|21281000|gb|AAM44970.1|
putative carbonic anhydrase [Arabidopsis thaliana]
Length = 280
Score = 226 bits (576), Expect = 2e-58
Identities = 113/159 (71%), Positives = 132/159 (82%)
Frame = +2
Query: 101 QKEEMAGESYDEAIASLTKLLSEKADLGAVAAAKIKDLTAE*EDAGSKPSNPDERIRTGF 280
+K+EMA ESY+ AI L LLS KADLG VAAAKIK LTAE ++ S S+ ERI+TGF
Sbjct: 19 EKDEMATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELDSSNSDAIERIKTGF 78
Query: 281 VQFKSEKFEKNPDLYGELAKGQSPKCLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVP 460
QFK+EK+ KN L+ LAK Q+PK LVFACSDSRVCPSHILNFQPGEAF+VRNIANMVP
Sbjct: 79 TQFKTEKYLKNSTLFNHLAKTQTPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVP 138
Query: 461 AFDKTKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIRG 577
FD+ ++SG GAA+EYAV+HLKVENI+VIGHSCCGGI+G
Sbjct: 139 PFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKG 177
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,137,729
Number of Sequences: 1393205
Number of extensions: 12264372
Number of successful extensions: 41664
Number of sequences better than 10.0: 396
Number of HSP's better than 10.0 without gapping: 38523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41116
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
