Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009034A_C01 KMC009034A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_037512.1| zinc finger protein 228 [Homo sapiens] gi|81348... 35 0.90
gb|AAG23968.1|AC084239_1 ZNF228 protein [Homo sapiens] 35 0.90
gb|AAK58577.1| Sh-RNase [Prunus dulcis] 34 1.5
ref|XP_225603.1| similar to SNIP-a [Rattus norvegicus] 33 3.4
gb|AAG18582.1|AF292394_1 KRP110 [Strongylocentrotus purpuratus] 32 5.9
>ref|NP_037512.1| zinc finger protein 228 [Homo sapiens]
gi|8134849|sp|Q9UJU3|Z228_HUMAN Zinc finger protein 228
gi|6466186|gb|AAF12816.1|AF198358_1 zinc finger protein
ZNF228 [Homo sapiens]
Length = 913
Score = 34.7 bits (78), Expect = 0.90
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Frame = +3
Query: 9 VEKHMKL-TENCIKTFINYK*T--CAMNLLVQLKSSVQTYKYNH*HCLTEL*SLP*LSAL 179
++ H K+ TE + T I Y + C+ NL +Q + ++ YN C L
Sbjct: 402 LQVHQKIHTEEKLYTDIEYGKSFICSSNLDIQHRVHMEENSYNSQECGNGFSLASHFQDL 461
Query: 180 TKPNTKAIKFKR-MCYISFSKNV*LEGRPKIY 272
+TK +KR +C SFS N+ L+G PKI+
Sbjct: 462 QIVHTKEQPYKRYVCSNSFSHNLHLQGHPKIH 493
>gb|AAG23968.1|AC084239_1 ZNF228 protein [Homo sapiens]
Length = 913
Score = 34.7 bits (78), Expect = 0.90
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Frame = +3
Query: 9 VEKHMKL-TENCIKTFINYK*T--CAMNLLVQLKSSVQTYKYNH*HCLTEL*SLP*LSAL 179
++ H K+ TE + T I Y + C+ NL +Q + ++ YN C L
Sbjct: 402 LQVHQKIHTEEKLYTDIEYGKSFICSSNLDIQHRVHMEENSYNSEECGNGFSLASHFQDL 461
Query: 180 TKPNTKAIKFKR-MCYISFSKNV*LEGRPKIY 272
+TK +KR +C SFS N+ L+G PKI+
Sbjct: 462 QIVHTKEQPYKRYVCSNSFSHNLYLQGHPKIH 493
>gb|AAK58577.1| Sh-RNase [Prunus dulcis]
Length = 178
Score = 33.9 bits (76), Expect = 1.5
Identities = 14/39 (35%), Positives = 24/39 (60%)
Frame = +1
Query: 88 WYSSNLLFRLTSITTSTALLNCDHSPNFQLLQNPTQRQS 204
W S+++ + ++T +T LL C P QL ++P QR+S
Sbjct: 129 WKYSDIISHIKAVTQTTPLLRCKPDPAAQLKRHPAQRKS 167
>ref|XP_225603.1| similar to SNIP-a [Rattus norvegicus]
Length = 843
Score = 32.7 bits (73), Expect = 3.4
Identities = 18/43 (41%), Positives = 23/43 (52%), Gaps = 1/43 (2%)
Frame = +2
Query: 353 RIWR*SSGLKLNLPKPKSPTLERLESSTNCLNQLLIPHN-QFC 478
R R + G K+NL KP P + ESST CL H+ +FC
Sbjct: 279 RALREAQGQKMNLEKPFPPDTCKAESSTGCLGLCKFTHSGEFC 321
>gb|AAG18582.1|AF292394_1 KRP110 [Strongylocentrotus purpuratus]
Length = 870
Score = 32.0 bits (71), Expect = 5.9
Identities = 23/73 (31%), Positives = 36/73 (48%), Gaps = 1/73 (1%)
Frame = +1
Query: 262 LKSILKNTASSTPR*RQKECQRFVRQNQM*KNLEVKFWI-EAKLAQTKITHSGETREQY* 438
LK LK ++ +KEC + VRQ ++ L+ + W+ E KL Q K G E
Sbjct: 626 LKQALKGAVTNQRDKWEKECNKRVRQTEL--KLQTEMWVREEKLRQLKQIVQGHEEE--- 680
Query: 439 LFESASHSSQSIL 477
ESA +++ +L
Sbjct: 681 --ESAKKAAKEVL 691
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,170,673
Number of Sequences: 1393205
Number of extensions: 8409263
Number of successful extensions: 15657
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15655
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
