Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008995A_C01 KMC008995A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196567.1| putative protein; protein id: At5g10050.1 [Arab... 173 2e-42
dbj|BAC43629.1| unknown protein [Arabidopsis thaliana] 170 1e-41
dbj|BAC42203.1| unknown protein [Arabidopsis thaliana] 163 1e-39
ref|NP_569008.1| Expressed protein; protein id: At5g65205.1, sup... 163 1e-39
dbj|BAB11656.1| contains similarity to dehydrogenase~gene_id:MQN... 135 5e-31
>ref|NP_196567.1| putative protein; protein id: At5g10050.1 [Arabidopsis thaliana]
gi|11358313|pir||T50009 hypothetical protein T31P16.40 -
Arabidopsis thaliana gi|7960724|emb|CAB92046.1| putative
protein [Arabidopsis thaliana]
Length = 299
Score = 173 bits (438), Expect = 2e-42
Identities = 79/125 (63%), Positives = 105/125 (83%)
Frame = -3
Query: 558 YSASKAALHALTDTLRLELALFGIDVVNVVPGAIKSNIGNSALARYDRMPELELFKPFEA 379
Y+A+KAA+HALTDTLRLEL FGIDV+NVVPG I++NI NSA+A +++MPEL+L+KP+E
Sbjct: 172 YTATKAAIHALTDTLRLELRPFGIDVINVVPGGIRTNIANSAVATFNKMPELKLYKPYEE 231
Query: 378 RIREQANFSQRSRTTPADVFAKNTVAVILKKNPPAWFSYGPYSTAMAIMYHLPICVRDFI 199
IRE+A SQR TPA+ FA++TVA +LKKNPPAWFS G YST MA+MYH+P+ ++DF
Sbjct: 232 AIRERAFISQRMNPTPAETFARDTVAAVLKKNPPAWFSSGRYSTLMAVMYHMPLWLKDFF 291
Query: 198 LKKIM 184
K+++
Sbjct: 292 QKQVL 296
>dbj|BAC43629.1| unknown protein [Arabidopsis thaliana]
Length = 279
Score = 170 bits (431), Expect = 1e-41
Identities = 79/125 (63%), Positives = 104/125 (83%)
Frame = -3
Query: 558 YSASKAALHALTDTLRLELALFGIDVVNVVPGAIKSNIGNSALARYDRMPELELFKPFEA 379
Y+A+KAA+HALTDTLRLEL FGIDV+NVVPG I++NI NSA+A +++MPEL+L+KP+E
Sbjct: 152 YTATKAAIHALTDTLRLELRPFGIDVINVVPGGIRTNIANSAVATFNKMPELKLYKPYEE 211
Query: 378 RIREQANFSQRSRTTPADVFAKNTVAVILKKNPPAWFSYGPYSTAMAIMYHLPICVRDFI 199
IRE+A SQR TPA+ FA++TVA +LKKNPPAWFS G YST MA MYH+P+ ++DF
Sbjct: 212 AIRERAFISQRMNPTPAETFARDTVAAVLKKNPPAWFSSGRYSTLMAGMYHMPLWLKDFF 271
Query: 198 LKKIM 184
K+++
Sbjct: 272 QKQVL 276
>dbj|BAC42203.1| unknown protein [Arabidopsis thaliana]
Length = 240
Score = 163 bits (413), Expect = 1e-39
Identities = 77/123 (62%), Positives = 99/123 (79%)
Frame = -3
Query: 558 YSASKAALHALTDTLRLELALFGIDVVNVVPGAIKSNIGNSALARYDRMPELELFKPFEA 379
Y+ASKAALHALTDTLRLEL FGIDV+N+VPG I+SNI NS ++ ++ +PEL+L+KPFE
Sbjct: 108 YTASKAALHALTDTLRLELKPFGIDVINIVPGGIQSNIANSGISSFNNLPELKLYKPFED 167
Query: 378 RIREQANFSQRSRTTPADVFAKNTVAVILKKNPPAWFSYGPYSTAMAIMYHLPICVRDFI 199
IRE+A SQ + P + FAK TV+V+LKKNPPAW+S G ST MAIM+H+PI ++DF+
Sbjct: 168 AIRERAFLSQNIKPIPTETFAKETVSVVLKKNPPAWYSTGRLSTVMAIMHHIPIFMKDFL 227
Query: 198 LKK 190
L K
Sbjct: 228 LTK 230
>ref|NP_569008.1| Expressed protein; protein id: At5g65205.1, supported by cDNA:
gi_15983431, supported by cDNA: gi_20466144 [Arabidopsis
thaliana] gi|15983432|gb|AAL11584.1|AF424590_1
AT5g10050/T31P16_40 [Arabidopsis thaliana]
gi|20466145|gb|AAM19994.1| AT5g10050/T31P16_40
[Arabidopsis thaliana]
Length = 285
Score = 163 bits (413), Expect = 1e-39
Identities = 77/123 (62%), Positives = 99/123 (79%)
Frame = -3
Query: 558 YSASKAALHALTDTLRLELALFGIDVVNVVPGAIKSNIGNSALARYDRMPELELFKPFEA 379
Y+ASKAALHALTDTLRLEL FGIDV+N+VPG I+SNI NS ++ ++ +PEL+L+KPFE
Sbjct: 153 YTASKAALHALTDTLRLELKPFGIDVINIVPGGIQSNIANSGISSFNNLPELKLYKPFED 212
Query: 378 RIREQANFSQRSRTTPADVFAKNTVAVILKKNPPAWFSYGPYSTAMAIMYHLPICVRDFI 199
IRE+A SQ + P + FAK TV+V+LKKNPPAW+S G ST MAIM+H+PI ++DF+
Sbjct: 213 AIRERAFLSQNIKPIPTETFAKETVSVVLKKNPPAWYSTGRLSTVMAIMHHIPIFMKDFL 272
Query: 198 LKK 190
L K
Sbjct: 273 LTK 275
>dbj|BAB11656.1| contains similarity to dehydrogenase~gene_id:MQN23.14 [Arabidopsis
thaliana]
Length = 341
Score = 135 bits (339), Expect = 5e-31
Identities = 63/98 (64%), Positives = 80/98 (81%)
Frame = -3
Query: 558 YSASKAALHALTDTLRLELALFGIDVVNVVPGAIKSNIGNSALARYDRMPELELFKPFEA 379
Y+ASKAALHALTDTLRLEL FGIDV+N+VPG I+SNI NS ++ ++ +PEL+L+KPFE
Sbjct: 153 YTASKAALHALTDTLRLELKPFGIDVINIVPGGIQSNIANSGISSFNNLPELKLYKPFED 212
Query: 378 RIREQANFSQRSRTTPADVFAKNTVAVILKKNPPAWFS 265
IRE+A SQ + P + FAK TV+V+LKKNPPAW+S
Sbjct: 213 AIRERAFLSQNIKPIPTETFAKETVSVVLKKNPPAWYS 250
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,987,705
Number of Sequences: 1393205
Number of extensions: 9704604
Number of successful extensions: 25081
Number of sequences better than 10.0: 635
Number of HSP's better than 10.0 without gapping: 24604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25058
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
