Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008950A_C01 KMC008950A_c01
(716 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF32354.1|AF220198_1 putative protein [Vitis riparia] 79 8e-14
ref|NP_190741.1| putative protein; protein id: At3g51730.1, supp... 74 2e-12
dbj|BAB39899.1| hypothetical protein~similar to Arabidopsis thal... 74 2e-12
ref|NP_195800.1| putative protein; protein id: At5g01800.1, supp... 66 4e-10
gb|EAA13115.1| agCP2178 [Anopheles gambiae str. PEST] 39 0.095
>gb|AAF32354.1|AF220198_1 putative protein [Vitis riparia]
Length = 174
Score = 78.6 bits (192), Expect = 8e-14
Identities = 36/67 (53%), Positives = 48/67 (70%)
Frame = -1
Query: 716 DPDIKLEIMESLLKACNSMEKKLAKECKRMVFEYGPFVLMNAEKFLKTTGICTALHACPA 537
DPD +LEI+E LLK C+++ K L ++CKRMVFEYGP +L N E+FL+ +CT +HAC
Sbjct: 100 DPDTQLEILELLLKGCDAV-KGLVRKCKRMVFEYGPIILNNTERFLEKNDVCTTVHACGV 158
Query: 536 STAVSQE 516
A S E
Sbjct: 159 PPAASVE 165
>ref|NP_190741.1| putative protein; protein id: At3g51730.1, supported by cDNA:
93651. [Arabidopsis thaliana] gi|11358088|pir||T46069
hypothetical protein T18N14.110 - Arabidopsis thaliana
gi|6580155|emb|CAB63159.1| putative protein [Arabidopsis
thaliana] gi|21618004|gb|AAM67054.1| unknown
[Arabidopsis thaliana] gi|21928164|gb|AAM78109.1|
AT3g51730/T18N14_110 [Arabidopsis thaliana]
gi|23505801|gb|AAN28760.1| At3g51730/T18N14_110
[Arabidopsis thaliana]
Length = 213
Score = 74.3 bits (181), Expect = 2e-12
Identities = 33/70 (47%), Positives = 48/70 (68%)
Frame = -1
Query: 716 DPDIKLEIMESLLKACNSMEKKLAKECKRMVFEYGPFVLMNAEKFLKTTGICTALHACPA 537
DPD +L+I+E L+K C S+ K K+CK +VFEYGP +L+NAE+FL +CT L ACP
Sbjct: 142 DPDTQLDIVELLIKGCKSL-KNYEKKCKTLVFEYGPLILVNAEEFLVKNDVCTLLRACPP 200
Query: 536 STAVSQEASI 507
+V ++ +
Sbjct: 201 EKSVLRQPEL 210
>dbj|BAB39899.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 3,
T18N14.110 [Oryza sativa (japonica cultivar-group)]
gi|15528763|dbj|BAB64805.1| P0701D05.19 [Oryza sativa
(japonica cultivar-group)]
Length = 240
Score = 73.9 bits (180), Expect = 2e-12
Identities = 31/71 (43%), Positives = 50/71 (69%)
Frame = -1
Query: 716 DPDIKLEIMESLLKACNSMEKKLAKECKRMVFEYGPFVLMNAEKFLKTTGICTALHACPA 537
DPD++LEI+E LKAC+ + + ++CK+MV EY P +L+ ++KFL+TT +C+ +HAC
Sbjct: 167 DPDMQLEIVEIFLKACSKADNYV-QQCKKMVLEYTPLILVKSQKFLETTDVCSTIHACKT 225
Query: 536 STAVSQEASIM 504
T S E ++
Sbjct: 226 GTQASAETMLL 236
>ref|NP_195800.1| putative protein; protein id: At5g01800.1, supported by cDNA:
gi_15912284, supported by cDNA: gi_19548000 [Arabidopsis
thaliana] gi|11358143|pir||T48201 hypothetical protein
T20L15.70 - Arabidopsis thaliana
gi|7329653|emb|CAB82750.1| putative protein [Arabidopsis
thaliana] gi|15912285|gb|AAL08276.1| AT5g01800/T20L15_70
[Arabidopsis thaliana] gi|19548001|gb|AAL87364.1|
AT5g01800/T20L15_70 [Arabidopsis thaliana]
Length = 217
Score = 66.2 bits (160), Expect = 4e-10
Identities = 30/59 (50%), Positives = 40/59 (66%)
Frame = -1
Query: 716 DPDIKLEIMESLLKACNSMEKKLAKECKRMVFEYGPFVLMNAEKFLKTTGICTALHACP 540
DP+ KL+I+ LLK C S+ K CK+MVFEYGP +L + +KFL+ +CT LH CP
Sbjct: 142 DPETKLKIIRLLLKECKSLNNYQDK-CKKMVFEYGPLMLTDLQKFLEKKDVCTILHVCP 199
>gb|EAA13115.1| agCP2178 [Anopheles gambiae str. PEST]
Length = 923
Score = 38.5 bits (88), Expect = 0.095
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -1
Query: 716 DPDIKLEIMESLLKACNSMEKKLAKECKRMVFEYGPFVLMNAEKFLKT---TGICTALHA 546
D + EI ++ C+ M + K+C +++ +YG F++ KFL+T ICT L
Sbjct: 774 DNKTRTEIENAVRTVCDKMPGTITKQCDKLIDQYGEFII----KFLQTLPPKAICTQLDL 829
Query: 545 CPASTAVSQEASI 507
C + Q++ +
Sbjct: 830 CKEQLSRLQQSEL 842
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,363,723
Number of Sequences: 1393205
Number of extensions: 12122441
Number of successful extensions: 28334
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 27193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28312
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
