Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008911A_C01 KMC008911A_c01
(459 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_703239.1| hypothetical protein [Plasmodium falciparum 3D7... 34 0.82
gb|AAA62951.1| u1764aa [Mycobacterium leprae] 34 0.82
ref|NP_059389.1| orf265_2 [Paramecium aurelia] 33 1.8
ref|NP_180130.1| hypothetical protein; protein id: At2g25590.1 [... 32 2.4
gb|AAK01090.1| putative BSC1 sodium channel protein [Blattella g... 32 3.1
>ref|NP_703239.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23510611|emb|CAD48996.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1472
Score = 33.9 bits (76), Expect = 0.82
Identities = 35/137 (25%), Positives = 59/137 (42%), Gaps = 6/137 (4%)
Frame = +2
Query: 50 KEKQKKISKLKISRNK*INTTISKIQN*KITQDIRFNSLSPAYILQQYTFQETHQNPISL 229
K K KK K+K ++K + KI+N D R N + Q F+ HQ+ ++
Sbjct: 300 KVKNKK-DKIKNKKDK-VKNKDDKIKN---NNDERQNKIKMPINNNQNNFK--HQDKCNI 352
Query: 230 HC------IRTFITNSTNSSILSYAKDTKSMIQ*PPQNTHKHIHHQELPFSTITLLHNFY 391
+ I+ +I + TN KD + + N H+HIH++ + LHN
Sbjct: 353 NHQHENNKIKHYIDDITNQQNEQNNKDLHNCL-----NDHQHIHNKNIITEHTNYLHNHI 407
Query: 392 TVQIN*NISSPTSNLHK 442
T + N + P N+ +
Sbjct: 408 TTNAHVNNNQPIINIQQ 424
>gb|AAA62951.1| u1764aa [Mycobacterium leprae]
Length = 85
Score = 33.9 bits (76), Expect = 0.82
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +2
Query: 215 NPISLHCIRTFITNSTNSSILSYAKDTKSMIQ*PPQNTHKHIHHQELPFSTITLLHNFYT 394
+P+S IRT +S NS+++ + +I+ P++ +HIH ELP H+
Sbjct: 14 SPVSTSAIRTSGASSKNSAVIII----RMIIEGKPEDVAQHIHASELPLHLNGCTHHASN 69
Query: 395 VQIN*NISSPTSN 433
+ N+++ T N
Sbjct: 70 HRYGLNLTTQTLN 82
>ref|NP_059389.1| orf265_2 [Paramecium aurelia]
Length = 265
Score = 32.7 bits (73), Expect = 1.8
Identities = 18/44 (40%), Positives = 25/44 (55%), Gaps = 3/44 (6%)
Frame = -2
Query: 137 FFNFGF---WRWLY*FTCFWIFLVC*FFFVSPLPKILNEGLLIF 15
FFNF F + W+ FT F+IFLV F+F S + N+ +F
Sbjct: 61 FFNFEFLTGFFWVVEFTVFFIFLVFYFYFSSNGTIVFNKNFFLF 104
>ref|NP_180130.1| hypothetical protein; protein id: At2g25590.1 [Arabidopsis
thaliana] gi|25412334|pir||C84650 hypothetical protein
At2g25590 [imported] - Arabidopsis thaliana
gi|4874300|gb|AAD31362.1| hypothetical protein
[Arabidopsis thaliana]
Length = 381
Score = 32.3 bits (72), Expect = 2.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 342 WMCLCVFCGGYCIMDLVSLAYESILELVEL 253
W C C+F GG C + LV Y +L E+
Sbjct: 271 WNCPCLFVGGICTVGLVIKIYRKVLNFYEI 300
>gb|AAK01090.1| putative BSC1 sodium channel protein [Blattella germanica]
Length = 2304
Score = 32.0 bits (71), Expect = 3.1
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = -1
Query: 345 WWMCLCVFCGGYCIMDLVSLAYESILELVELVMKVLIQWSEIGFWCVSWNVYCCRI*AGD 166
W++ + +F ++L +E I LV+K ++ W+ +GF C +++
Sbjct: 1295 WFILVLIFASS------ITLCFEDIYLDQNLVLKNVLYWTNLGF-CALFSIEM------- 1340
Query: 165 SELNLISWVIF*FW-----ILEMVVLIYLFLDIFSLLI 67
++ W+ FW ++ I +F+ IFSLL+
Sbjct: 1341 ----MLKWLALGFWRYFTSFWTILDFIIVFVSIFSLLM 1374
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,938,141
Number of Sequences: 1393205
Number of extensions: 9516078
Number of successful extensions: 23553
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 22838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23519
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
