Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008899A_C01 KMC008899A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179334.2| putative thioredoxin reductase; protein id: At2... 116 2e-25
sp|Q39242|TRB2_ARATH Thioredoxin reductase 2 (NADPH-dependent th... 116 2e-25
pir||S44026 thioredoxin-disulfide reductase (EC 1.8.1.9) 2 - Ara... 115 4e-25
pir||T12708 thioredoxin-disulfide reductase (EC 1.8.1.9) - commo... 112 3e-24
gb|AAO42318.1| putative thioredoxin reductase (NADPH) 2 [Arabido... 106 1e-22
>ref|NP_179334.2| putative thioredoxin reductase; protein id: At2g17420.1, supported
by cDNA: gi_20466579 [Arabidopsis thaliana]
gi|20466580|gb|AAM20607.1| putative thioredoxin
reductase [Arabidopsis thaliana]
Length = 293
Score = 116 bits (290), Expect = 2e-25
Identities = 64/99 (64%), Positives = 75/99 (75%)
Frame = -3
Query: 499 VVGAYGDDKGRVLGGVKVKNVVSGVVSDLKVSGLFFAIGHEPATKFLEGQLELDSDGYLV 320
VV AYGD+ GRVLGG+KVKNVV+G VSDLKVSGLFFAIGHEPATKFL+GQLELD DGY+V
Sbjct: 178 VVEAYGDENGRVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGQLELDEDGYVV 237
Query: 319 T*ATGLPCPVLREFLLSGDVHGPRRIGKLLHAAGPGCMA 203
T V+ F +GDV ++ + + AAG GCMA
Sbjct: 238 TKPGTTKTSVVGVF-AAGDVQ-DKKYRQAITAAGTGCMA 274
>sp|Q39242|TRB2_ARATH Thioredoxin reductase 2 (NADPH-dependent thioredoxin reductase 2)
(NTR 2) gi|25528214|pir||A84552 probable thioredoxin
reductase [imported] - Arabidopsis thaliana
Length = 383
Score = 116 bits (290), Expect = 2e-25
Identities = 64/99 (64%), Positives = 75/99 (75%)
Frame = -3
Query: 499 VVGAYGDDKGRVLGGVKVKNVVSGVVSDLKVSGLFFAIGHEPATKFLEGQLELDSDGYLV 320
VV AYGD+ GRVLGG+KVKNVV+G VSDLKVSGLFFAIGHEPATKFL+GQLELD DGY+V
Sbjct: 268 VVEAYGDENGRVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGQLELDEDGYVV 327
Query: 319 T*ATGLPCPVLREFLLSGDVHGPRRIGKLLHAAGPGCMA 203
T V+ F +GDV ++ + + AAG GCMA
Sbjct: 328 TKPGTTKTSVVGVF-AAGDVQ-DKKYRQAITAAGTGCMA 364
>pir||S44026 thioredoxin-disulfide reductase (EC 1.8.1.9) 2 - Arabidopsis
thaliana (fragment) gi|468524|emb|CAA80655.1| NADPH
thioredoxin reductase [Arabidopsis thaliana]
Length = 302
Score = 115 bits (287), Expect = 4e-25
Identities = 63/99 (63%), Positives = 75/99 (75%)
Frame = -3
Query: 499 VVGAYGDDKGRVLGGVKVKNVVSGVVSDLKVSGLFFAIGHEPATKFLEGQLELDSDGYLV 320
VV AYGD+ GRVLGG+KVKNVV+G VSDLKVSGLFFAIGH+PATKFL+GQLELD DGY+V
Sbjct: 187 VVEAYGDENGRVLGGLKVKNVVTGDVSDLKVSGLFFAIGHQPATKFLDGQLELDEDGYVV 246
Query: 319 T*ATGLPCPVLREFLLSGDVHGPRRIGKLLHAAGPGCMA 203
T V+ F +GDV ++ + + AAG GCMA
Sbjct: 247 TKPGTTKTSVVGVF-AAGDVQ-DKKYRQAITAAGTGCMA 283
>pir||T12708 thioredoxin-disulfide reductase (EC 1.8.1.9) - common sunflower
(fragment) gi|536838|gb|AAA33376.1| NADPH thioredoxin
reductase
Length = 117
Score = 112 bits (279), Expect = 3e-24
Identities = 61/99 (61%), Positives = 74/99 (74%)
Frame = -3
Query: 499 VVGAYGDDKGRVLGGVKVKNVVSGVVSDLKVSGLFFAIGHEPATKFLEGQLELDSDGYLV 320
VV AYG++ VLGG+KVKNVVSG VSDLKV+GLFFAIGHEPATKFL+GQLELDSDGY+V
Sbjct: 2 VVEAYGEEGKNVLGGLKVKNVVSGEVSDLKVNGLFFAIGHEPATKFLDGQLELDSDGYVV 61
Query: 319 T*ATGLPCPVLREFLLSGDVHGPRRIGKLLHAAGPGCMA 203
T G ++ +GDV ++ + + AAG GCMA
Sbjct: 62 T-KPGTTISSVKGVFAAGDVQ-DKKYRQAVTAAGSGCMA 98
>gb|AAO42318.1| putative thioredoxin reductase (NADPH) 2 [Arabidopsis thaliana]
Length = 333
Score = 106 bits (265), Expect = 1e-22
Identities = 60/99 (60%), Positives = 72/99 (72%)
Frame = -3
Query: 499 VVGAYGDDKGRVLGGVKVKNVVSGVVSDLKVSGLFFAIGHEPATKFLEGQLELDSDGYLV 320
VV AYGD + VLGG+KVKNVV+G VSDLKVSGLFFAIGHEPATKFL+G +ELDSDGY+V
Sbjct: 218 VVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVV 277
Query: 319 T*ATGLPCPVLREFLLSGDVHGPRRIGKLLHAAGPGCMA 203
T G + +GDV ++ + + AAG GCMA
Sbjct: 278 T-KPGTTQTSVPGVFAAGDVQ-DKKYRQAITAAGTGCMA 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,641,272
Number of Sequences: 1393205
Number of extensions: 10787606
Number of successful extensions: 40997
Number of sequences better than 10.0: 423
Number of HSP's better than 10.0 without gapping: 34760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40048
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
