Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008894A_C01 KMC008894A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86062.1| P0445E10.22 [Oryza sativa (japonica cultivar-gro... 41 0.011
gb|AAK91329.1|AC090441_11 Hypothetical protein [Oryza sativa] 40 0.015
gb|AAK92642.1|AC079634_3 Putative transmembrane protein [Oryza s... 40 0.019
gb|AAK91326.1|AC090441_8 Putative integral membrane protein [Ory... 39 0.033
gb|AAK91333.1|AC090441_15 Putative integral membrane protein [Or... 39 0.043
>dbj|BAB86062.1| P0445E10.22 [Oryza sativa (japonica cultivar-group)]
gi|20805025|dbj|BAB92700.1| P0478H03.16 [Oryza sativa
(japonica cultivar-group)]
Length = 473
Score = 40.8 bits (94), Expect = 0.011
Identities = 19/25 (76%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
Frame = -3
Query: 333 LEWWPFELLTVLS-LLPNPELKTSV 262
LEWW FELL ++S LLPNPEL+TSV
Sbjct: 230 LEWWSFELLILMSGLLPNPELQTSV 254
>gb|AAK91329.1|AC090441_11 Hypothetical protein [Oryza sativa]
Length = 313
Score = 40.4 bits (93), Expect = 0.015
Identities = 18/28 (64%), Positives = 24/28 (85%), Gaps = 1/28 (3%)
Frame = -3
Query: 345 DHWSLEWWPFELLTVLS-LLPNPELKTS 265
D+ S+EWW FEL+ +LS LLPNP+L+TS
Sbjct: 222 DYSSMEWWSFELVVLLSGLLPNPKLETS 249
>gb|AAK92642.1|AC079634_3 Putative transmembrane protein [Oryza sativa]
Length = 486
Score = 40.0 bits (92), Expect = 0.019
Identities = 18/25 (72%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
Frame = -3
Query: 333 LEWWPFELLTVLS-LLPNPELKTSV 262
LEWW FE+L +LS LLPNP+L+TSV
Sbjct: 275 LEWWSFEILVLLSGLLPNPQLETSV 299
>gb|AAK91326.1|AC090441_8 Putative integral membrane protein [Oryza sativa]
Length = 514
Score = 39.3 bits (90), Expect = 0.033
Identities = 17/25 (68%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
Frame = -3
Query: 333 LEWWPFELLTVLS-LLPNPELKTSV 262
LEWW FE+L +LS +LPNP+L+TSV
Sbjct: 272 LEWWSFEILVLLSGILPNPQLETSV 296
>gb|AAK91333.1|AC090441_15 Putative integral membrane protein [Oryza sativa]
gi|15217297|gb|AAK92641.1|AC079634_2 Putative integral
membrane protein [Oryza sativa]
Length = 477
Score = 38.9 bits (89), Expect = 0.043
Identities = 18/25 (72%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
Frame = -3
Query: 333 LEWWPFELLTVLS-LLPNPELKTSV 262
LEWW FE L +LS LLPNP+L+TSV
Sbjct: 266 LEWWSFEFLVMLSGLLPNPKLETSV 290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,918,585
Number of Sequences: 1393205
Number of extensions: 10246667
Number of successful extensions: 27556
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 26859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27525
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
