Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008784A_C01 KMC008784A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_011967.1| TRA1 is the homolog of the human protein TRRAP ... 35 0.61
ref|NP_197653.2| F-box protein; protein id: At5g22610.1 [Arabido... 34 0.79
ref|NP_704139.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.4
dbj|BAB11667.1| gene_id:MDJ22.3~unknown protein [Arabidopsis tha... 33 1.4
ref|NP_793362.1| ankyrin domain protein [Pseudomonas syringae pv... 33 2.3
>ref|NP_011967.1| TRA1 is the homolog of the human protein TRRAP which we have
isolated as an essential cofactor of c-Myc.; Tra1p
[Saccharomyces cerevisiae]
gi|731689|sp|P38811|YHP9_YEAST Hypothetical 433.2 kDa
protein in HXT5-NRK1 intergenic region
gi|626646|pir||S46715 hypothetical protein YHR099w -
yeast (Saccharomyces cerevisiae)
gi|487929|gb|AAB68923.1| Tra1p [Saccharomyces
cerevisiae]
Length = 3744
Score = 34.7 bits (78), Expect = 0.61
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -2
Query: 160 LGRVDYLTFVCAL*FLPLSFSQVNIFPNVNVS*LIVH*TKLNEI*RNEMNFN 5
LG VD+ T + LSF VN+FPN+N L+ H LN++ N + ++
Sbjct: 751 LGNVDFNTSNVLIRLFKLSFMSVNLFPNINEVVLLPH---LNDLILNSLKYS 799
>ref|NP_197653.2| F-box protein; protein id: At5g22610.1 [Arabidopsis thaliana]
Length = 472
Score = 34.3 bits (77), Expect = 0.79
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = -2
Query: 355 FEKSITKLPTMKSNCSDLNDYSLQSSAESLLIDRVLLKNRIESGSLLLCSGGNKLSSKSF 176
F++S+ LP++KS C + N YS ++S ESL + R+ ++ N +
Sbjct: 163 FDQSVDSLPSLKSMCLEENVYSNEASLESL-----ISSCRVLEDLTIVKIDDNVRDRGNS 217
Query: 175 GIGI*LGRVDYLTF 134
G+ I R+ YLTF
Sbjct: 218 GLVIDAPRLKYLTF 231
>ref|NP_704139.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498877|emb|CAD50955.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2062
Score = 33.5 bits (75), Expect = 1.4
Identities = 25/102 (24%), Positives = 45/102 (43%)
Frame = +1
Query: 10 NSSHSVIFHSVSFNVQSVNSHLHLEIYSLVKRTMAKITRHRQKLNNPLFQVKSQSQKI*M 189
+S I +S +N ++V S E ++K K R +++N + + + I
Sbjct: 747 SSEKKNISNSSKYNKKNVTSSELREEIKMLKENRKKFVRRIRRINEQILLILCNEKMI-- 804
Query: 190 TICYHHYRVTNYQTLFYFSVVPYQSTSSQLMIANYSHLDQNN 315
Y + NY+ FY SV+ + MI+N+S+ D N
Sbjct: 805 HNIYKCANLNNYKIKFYASVILSYIPNINEMISNFSNQDYLN 846
>dbj|BAB11667.1| gene_id:MDJ22.3~unknown protein [Arabidopsis thaliana]
Length = 502
Score = 33.5 bits (75), Expect = 1.4
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = -2
Query: 355 FEKSITKLPTMKSNCSDLNDYSLQSSAESLLIDRVLLKN----RIESGSLLLCSGGNKLS 188
F++S+ LP++KS C + N YS ++S ESL+ +L++ +I+ L L+
Sbjct: 163 FDQSVDSLPSLKSMCLEENVYSNEASLESLISSCRVLEDLTIVKIDDNVRFLRVHSQSLT 222
Query: 187 SKSFG 173
S S G
Sbjct: 223 SLSVG 227
>ref|NP_793362.1| ankyrin domain protein [Pseudomonas syringae pv. tomato str.
DC3000] gi|28853991|gb|AAO57057.1| ankyrin domain
protein [Pseudomonas syringae pv. tomato str. DC3000]
Length = 184
Score = 32.7 bits (73), Expect = 2.3
Identities = 24/67 (35%), Positives = 36/67 (52%), Gaps = 1/67 (1%)
Frame = -2
Query: 472 AIHGHVSSITGSRDTGCNPCFSFAQKSSETSTLQQYIKKFEKSITKLPTMKSNCS-DLND 296
A HGH S+T D G +PC A+ + + L I K E SI K +K++C DL +
Sbjct: 76 AYHGHQDSVTRLIDAGADPC---AKDNRGNTALMGAIFKGELSIAK-QLVKADCGPDLTN 131
Query: 295 YSLQSSA 275
+ Q++A
Sbjct: 132 NAGQTAA 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,798,035
Number of Sequences: 1393205
Number of extensions: 7374474
Number of successful extensions: 21448
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21442
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
