Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008764A_C01 KMC008764A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F86214 protein T6D22.2 [imported] - Arabidopsis thaliana gi... 349 1e-95
dbj|BAA09709.1| elongation factor-1 alpha [Nicotiana tabacum] 348 4e-95
sp|P43643|EF1A_TOBAC ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) (VIT... 348 4e-95
gb|AAN31833.1| putative translation elongation factor eEF-1 alph... 347 5e-95
ref|NP_200847.1| elongation factor 1-alpha (EF-1-alpha); protein... 347 5e-95
>pir||F86214 protein T6D22.2 [imported] - Arabidopsis thaliana
gi|8778823|gb|AAF79822.1|AC026875_2 T6D22.2 [Arabidopsis
thaliana]
Length = 967
Score = 349 bits (896), Expect = 1e-95
Identities = 169/174 (97%), Positives = 173/174 (99%)
Frame = +2
Query: 62 LLVMGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYA 241
+L MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYA
Sbjct: 516 VLTMGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYA 575
Query: 242 WVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIID 421
WVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIID
Sbjct: 576 WVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIID 635
Query: 422 STTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRFDEIV 583
STTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK+R+DEI+
Sbjct: 636 STTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEII 689
Score = 347 bits (891), Expect = 5e-95
Identities = 168/171 (98%), Positives = 171/171 (99%)
Frame = +2
Query: 71 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 250
MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 251 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 430
DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 431 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRFDEIV 583
GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK+R+DEI+
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEII 171
>dbj|BAA09709.1| elongation factor-1 alpha [Nicotiana tabacum]
Length = 447
Score = 348 bits (892), Expect = 4e-95
Identities = 169/171 (98%), Positives = 171/171 (99%)
Frame = +2
Query: 71 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 250
MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 251 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 430
DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 431 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRFDEIV 583
GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK+R+DEIV
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIV 171
>sp|P43643|EF1A_TOBAC ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) (VITRONECTIN-LIKE ADHESION
PROTEIN 1) (PVN1) gi|439577|gb|AAA20836.1|
vitronectin-like adhesion protein
Length = 447
Score = 348 bits (892), Expect = 4e-95
Identities = 169/171 (98%), Positives = 171/171 (99%)
Frame = +2
Query: 71 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 250
MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 251 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 430
DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 431 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRFDEIV 583
GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK+R+DEIV
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIV 171
>gb|AAN31833.1| putative translation elongation factor eEF-1 alpha chain (gene A4)
[Arabidopsis thaliana]
Length = 449
Score = 347 bits (891), Expect = 5e-95
Identities = 168/171 (98%), Positives = 171/171 (99%)
Frame = +2
Query: 71 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 250
MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 251 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 430
DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 431 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRFDEIV 583
GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK+R+DEI+
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEII 171
>ref|NP_200847.1| elongation factor 1-alpha (EF-1-alpha); protein id: At5g60390.1,
supported by cDNA: gi_13430509, supported by cDNA:
gi_16649068, supported by cDNA: gi_16930464, supported
by cDNA: gi_16974553 [Arabidopsis thaliana]
gi|18390827|ref|NP_563799.1| elongation factor 1-alpha
(EF-1-alpha); protein id: At1g07920.1, supported by
cDNA: 6135. [Arabidopsis thaliana]
gi|18390829|ref|NP_563800.1| elongation factor 1-alpha
(EF-1-alpha); protein id: At1g07930.1, supported by
cDNA: gi_13605681, supported by cDNA: gi_15081764,
supported by cDNA: gi_17064953, supported by cDNA:
gi_18086388, supported by cDNA: gi_19347768 [Arabidopsis
thaliana] gi|18390831|ref|NP_563801.1| elongation factor
1-alpha (EF-1-alpha); protein id: At1g07940.1, supported
by cDNA: gi_14517495 [Arabidopsis thaliana]
gi|119143|sp|P13905|EF1A_ARATH Elongation factor 1-alpha
(EF-1-alpha) gi|81606|pir||S06724 translation elongation
factor eEF-1 alpha chain - Arabidopsis thaliana
gi|295788|emb|CAA34453.1| elongation factor 1-alpha
[Arabidopsis thaliana] gi|1369927|emb|CAA34454.1|
elongation factor 1-alpha [Arabidopsis thaliana]
gi|1369928|emb|CAA34455.1| elongation factor 1-alpha
[Arabidopsis thaliana] gi|1532172|gb|AAB07882.1|
EF-1alpha-A1 [Arabidopsis thaliana]
gi|1532173|gb|AAB07883.1| EF-1alpha-A2 [Arabidopsis
thaliana] gi|1532174|gb|AAB07884.1| EF-1alpha-A3
[Arabidopsis thaliana]
gi|8778848|gb|AAF79847.1|AC026875_27 T6D22.3
[Arabidopsis thaliana] gi|9757743|dbj|BAB08224.1|
elongation factor 1-alpha (EF-1-alpha) [Arabidopsis
thaliana] gi|14517496|gb|AAK62638.1| At1g07940/T6D22_14
[Arabidopsis thaliana] gi|16649069|gb|AAL24386.1|
elongation factor 1-alpha (EF-1-alpha) [Arabidopsis
thaliana] gi|16930465|gb|AAL31918.1|AF419586_1
AT5g60390/muf9_40 [Arabidopsis thaliana]
gi|16974554|gb|AAL31193.1| AT5g60390/muf9_40
[Arabidopsis thaliana] gi|19347769|gb|AAL86336.1|
putative elongation factor 1-alpha [Arabidopsis
thaliana] gi|21593941|gb|AAM65897.1| elongation factor
1-alpha [Arabidopsis thaliana]
gi|21689837|gb|AAM67562.1| putative elongation factor
1-alpha [Arabidopsis thaliana]
gi|22136248|gb|AAM91202.1| elongation factor 1-alpha
[Arabidopsis thaliana] gi|22137034|gb|AAM91362.1|
At5g60390/muf9_40 [Arabidopsis thaliana]
gi|22655292|gb|AAM98236.1| unknown protein [Arabidopsis
thaliana] gi|22655300|gb|AAM98240.1| unknown protein
[Arabidopsis thaliana] gi|23308389|gb|AAN18164.1|
At1g07940/T6D22_14 [Arabidopsis thaliana]
gi|27311635|gb|AAO00783.1| elongation factor 1-alpha
[Arabidopsis thaliana] gi|27311673|gb|AAO00802.1|
elongation factor 1-alpha [Arabidopsis thaliana]
gi|27311809|gb|AAO00870.1| Unknown protein [Arabidopsis
thaliana] gi|28058707|gb|AAO29944.1| Unknown protein
[Arabidopsis thaliana]
Length = 449
Score = 347 bits (891), Expect = 5e-95
Identities = 168/171 (98%), Positives = 171/171 (99%)
Frame = +2
Query: 71 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 250
MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 251 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 430
DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 431 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRFDEIV 583
GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK+R+DEI+
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEII 171
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,977,390
Number of Sequences: 1393205
Number of extensions: 9961485
Number of successful extensions: 36007
Number of sequences better than 10.0: 3784
Number of HSP's better than 10.0 without gapping: 32260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33714
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
