Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008732A_C01 KMC008732A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG13395.1|AF283006_1 cold acclimation protein WCOR413-like p... 134 7e-31
gb|AAO24629.1| cold acclimation protein COR413-PM1 [Zea mays] 131 5e-30
gb|AAL23724.1| cold acclimation protein WCOR413-like protein bet... 125 3e-28
ref|NP_195439.1| cold acclimation protein homolog; protein id: A... 125 3e-28
ref|NP_179196.1| similar to cold acclimation protein WCOR413 (Tr... 123 1e-27
>gb|AAG13395.1|AF283006_1 cold acclimation protein WCOR413-like protein [Oryza sativa]
Length = 210
Score = 134 bits (336), Expect = 7e-31
Identities = 58/83 (69%), Positives = 72/83 (85%)
Frame = -2
Query: 494 FPDWLELPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYLLQEHIRASGGFRNSFTK 315
FPDWLELP A+I+LI VAP L A+TFR ++VG+ +CL+I CYLLQEHIRASGGFRN+F K
Sbjct: 125 FPDWLELPGAVILLIAVAPNLFASTFRGDLVGIFICLIIGCYLLQEHIRASGGFRNAFRK 184
Query: 314 ANGVSNSIGIIILLVYPIWAAVV 246
NGVSNSIGI++L +YP+WA V+
Sbjct: 185 GNGVSNSIGILLLFIYPVWALVL 207
>gb|AAO24629.1| cold acclimation protein COR413-PM1 [Zea mays]
Length = 212
Score = 131 bits (329), Expect = 5e-30
Identities = 57/83 (68%), Positives = 72/83 (86%)
Frame = -2
Query: 494 FPDWLELPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYLLQEHIRASGGFRNSFTK 315
FPDWLELP ++I+L VVAP L A++FR ++VGV +CLVI CYLLQEHI+ASGGFRN+F K
Sbjct: 127 FPDWLELPGSIILLTVVAPSLFADSFRGDLVGVFICLVIGCYLLQEHIKASGGFRNAFRK 186
Query: 314 ANGVSNSIGIIILLVYPIWAAVV 246
NGVSNSIGI++L +YP+WA V+
Sbjct: 187 GNGVSNSIGILLLFIYPVWAGVL 209
>gb|AAL23724.1| cold acclimation protein WCOR413-like protein beta form [Triticum
aestivum]
Length = 208
Score = 125 bits (313), Expect = 3e-28
Identities = 55/83 (66%), Positives = 69/83 (82%)
Frame = -2
Query: 494 FPDWLELPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYLLQEHIRASGGFRNSFTK 315
FPDWL+LP +LI+L VVAP L A+ FR+++VGV +CL I CYLLQEHIR SGGFR +F K
Sbjct: 123 FPDWLKLPGSLILLTVVAPSLFADHFRNDLVGVFICLAIGCYLLQEHIRVSGGFREAFRK 182
Query: 314 ANGVSNSIGIIILLVYPIWAAVV 246
ANGVSN+IGI++L VYP+W V+
Sbjct: 183 ANGVSNTIGIVLLFVYPVWVLVL 205
>ref|NP_195439.1| cold acclimation protein homolog; protein id: At4g37220.1
[Arabidopsis thaliana] gi|25354581|pir||G85439 cold
acclimation protein homolog [imported] - Arabidopsis
thaliana gi|4006858|emb|CAB16776.1| cold acclimation
protein homolog [Arabidopsis thaliana]
gi|7270705|emb|CAB80388.1| cold acclimation protein
homolog [Arabidopsis thaliana]
gi|26449889|dbj|BAC42066.1| putative ap2 cold
acclimation protein [Arabidopsis thaliana]
gi|28973359|gb|AAO64004.1| putative cold acclimation
protein homolog [Arabidopsis thaliana]
Length = 202
Score = 125 bits (313), Expect = 3e-28
Identities = 55/86 (63%), Positives = 71/86 (81%)
Frame = -2
Query: 494 FPDWLELPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYLLQEHIRASGGFRNSFTK 315
FP+WLE+P ALI+++VV+P LIA T R++ VG V+CLVIACYL EHI+ASGGF+NSFT+
Sbjct: 117 FPEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGGFKNSFTQ 176
Query: 314 ANGVSNSIGIIILLVYPIWAAVVIIF 237
NG+SN+IGI+ LLVYP+W IF
Sbjct: 177 KNGISNTIGIVALLVYPVWTIFFHIF 202
>ref|NP_179196.1| similar to cold acclimation protein WCOR413 (Triticum aestivum);
protein id: At2g15970.1, supported by cDNA: 7835.,
supported by cDNA: gi_10121840, supported by cDNA:
gi_11127594, supported by cDNA: gi_20147352 [Arabidopsis
thaliana] gi|25354582|pir||C84535 hypothetical protein
At2g15970 [imported] - Arabidopsis thaliana
gi|5306238|gb|AAD41971.1| similar to cold acclimation
protein WCOR413 (Triticum aestivum) [Arabidopsis
thaliana] gi|10121841|gb|AAG13393.1|AF283004_1 cold
acclimation protein WCOR413-like protein alpha form
[Arabidopsis thaliana] gi|11127595|dbj|BAB17682.1| cold
acclimation protein homolog [Arabidopsis thaliana]
gi|20147353|gb|AAM10389.1| At2g15970/F19G14.3
[Arabidopsis thaliana] gi|21595314|gb|AAM66090.1| cold
acclimation protein WCOR413-like protein [Arabidopsis
thaliana] gi|23505785|gb|AAN28752.1| At2g15970/F19G14.3
[Arabidopsis thaliana]
Length = 197
Score = 123 bits (308), Expect = 1e-27
Identities = 54/80 (67%), Positives = 70/80 (87%)
Frame = -2
Query: 488 DWLELPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYLLQEHIRASGGFRNSFTKAN 309
++LELP AL++L VVAP LIA TFRD+ +G+ +CL I CYLLQEHIRASGGFRN+FTKAN
Sbjct: 117 EYLELPVALVLLAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGGFRNAFTKAN 176
Query: 308 GVSNSIGIIILLVYPIWAAV 249
G+SN++GII L+V+P+WA +
Sbjct: 177 GISNTVGIICLVVFPVWALI 196
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,646,648
Number of Sequences: 1393205
Number of extensions: 8078888
Number of successful extensions: 17875
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17864
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
