Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008698A_C01 KMC008698A_c01
(499 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL16193.1|AF428424_1 At2g47760/F17A22.15 [Arabidopsis thaliana] 125 2e-28
ref|NP_182297.1| Not56-like protein; protein id: At2g47760.1, su... 125 2e-28
dbj|BAB64783.1| putative Not56-like protein [Oryza sativa (japon... 83 1e-15
ref|NP_666051.1| DNA segment, Chr 16, ERATO Doi 36, expressed [M... 79 2e-14
ref|XP_148657.1| similar to Lethal(2)neighbour of tid protein 2 ... 79 2e-14
>gb|AAL16193.1|AF428424_1 At2g47760/F17A22.15 [Arabidopsis thaliana]
Length = 438
Score = 125 bits (315), Expect = 2e-28
Identities = 55/72 (76%), Positives = 61/72 (84%)
Frame = -1
Query: 499 SLHYQFYSWYFYSLPYLLWRTRYPTLMRLILFVGVELCWNIYPSNRLSSALLLCLHLIIL 320
SLHYQFYSWYFYSLPYLLWRT +PT +RLI+F+G+ELCWN+YPS SS LLLCLHLIIL
Sbjct: 353 SLHYQFYSWYFYSLPYLLWRTPFPTWLRLIMFLGIELCWNVYPSTPSSSGLLLCLHLIIL 412
Query: 319 WGLWSAPPEYPY 284
GLW AP PY
Sbjct: 413 VGLWLAPSVDPY 424
>ref|NP_182297.1| Not56-like protein; protein id: At2g47760.1, supported by cDNA:
gi_16226530 [Arabidopsis thaliana]
gi|25367230|pir||B84919 Not56-like protein [imported] -
Arabidopsis thaliana gi|3738289|gb|AAC63631.1|
Not56-like protein [Arabidopsis thaliana]
Length = 438
Score = 125 bits (315), Expect = 2e-28
Identities = 55/72 (76%), Positives = 61/72 (84%)
Frame = -1
Query: 499 SLHYQFYSWYFYSLPYLLWRTRYPTLMRLILFVGVELCWNIYPSNRLSSALLLCLHLIIL 320
SLHYQFYSWYFYSLPYLLWRT +PT +RLI+F+G+ELCWN+YPS SS LLLCLHLIIL
Sbjct: 353 SLHYQFYSWYFYSLPYLLWRTPFPTWLRLIMFLGIELCWNVYPSTPSSSGLLLCLHLIIL 412
Query: 319 WGLWSAPPEYPY 284
GLW AP PY
Sbjct: 413 VGLWLAPSVDPY 424
>dbj|BAB64783.1| putative Not56-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 387
Score = 83.2 bits (204), Expect = 1e-15
Identities = 41/76 (53%), Positives = 47/76 (60%)
Frame = -1
Query: 499 SLHYQFYSWYFYSLPYLLWRTRYPTLMRLILFVGVELCWNIYPSNRLSSALLLCLHLIIL 320
SLHYQFYSW +ILF+ VELCWNIYPS SS LLL +H+ IL
Sbjct: 330 SLHYQFYSW-------------------VILFLAVELCWNIYPSTAYSSLLLLFIHISIL 370
Query: 319 WGLWSAPPEYPYAENK 272
+GLWS+P EYPYA K
Sbjct: 371 FGLWSSPAEYPYANGK 386
>ref|NP_666051.1| DNA segment, Chr 16, ERATO Doi 36, expressed [Mus musculus]
gi|21619514|gb|AAH31893.1| Similar to Not56 (D.
melanogaster)-like protein [Mus musculus]
Length = 438
Score = 79.3 bits (194), Expect = 2e-14
Identities = 38/74 (51%), Positives = 49/74 (65%), Gaps = 3/74 (4%)
Frame = -1
Query: 499 SLHYQFYSWYFYSLPYLLWR--TRYPT-LMRLILFVGVELCWNIYPSNRLSSALLLCLHL 329
SLHYQFY WYF++LPYLLW R+ T L+RL++ +EL WN YPS SSA L H
Sbjct: 355 SLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSWNTYPSTSFSSAALHLCHA 414
Query: 328 IILWGLWSAPPEYP 287
++L LW +P +P
Sbjct: 415 VVLLQLWLSPESFP 428
>ref|XP_148657.1| similar to Lethal(2)neighbour of tid protein 2 (NOT53) [Mus
musculus]
Length = 382
Score = 79.3 bits (194), Expect = 2e-14
Identities = 38/74 (51%), Positives = 49/74 (65%), Gaps = 3/74 (4%)
Frame = -1
Query: 499 SLHYQFYSWYFYSLPYLLWR--TRYPT-LMRLILFVGVELCWNIYPSNRLSSALLLCLHL 329
SLHYQFY WYF++LPYLLW R+ T L+RL++ +EL WN YPS SSA L H
Sbjct: 299 SLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSWNTYPSTSFSSAALHLCHA 358
Query: 328 IILWGLWSAPPEYP 287
++L LW +P +P
Sbjct: 359 VVLLQLWLSPESFP 372
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,363,802
Number of Sequences: 1393205
Number of extensions: 10034686
Number of successful extensions: 26641
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 25843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26628
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
