Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008658A_C01 KMC008658A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB90268.1| B1112D09.9 [Oryza sativa (japonica cultivar-group)] 127 1e-28
ref|NP_175333.2| unknown protein; protein id: At1g49040.1, suppo... 104 5e-22
gb|AAF69703.1|AC016041_8 F27J15.17 [Arabidopsis thaliana] 104 5e-22
ref|NP_567317.2| score=37.6, E=2.9e-07, N=3; protein id: At4g074... 33 1.4
dbj|BAC05789.1| seven transmembrane helix receptor [Homo sapiens] 33 2.4
>dbj|BAB90268.1| B1112D09.9 [Oryza sativa (japonica cultivar-group)]
Length = 1204
Score = 127 bits (318), Expect = 1e-28
Identities = 58/70 (82%), Positives = 63/70 (89%)
Frame = -2
Query: 507 DNSSSLFHRPPERLGGFSGTGSQMAGWQLYRTPPKTVAMVRCIASDLERKRICSGGRNGL 328
DNS SLFHRP ER GGFS TGS++AGWQLYRTP KT AMVRC+ASDL+RKRICSGGRNGL
Sbjct: 1135 DNSMSLFHRPQERFGGFSNTGSKVAGWQLYRTPQKTAAMVRCVASDLDRKRICSGGRNGL 1194
Query: 327 LRLWDATINI 298
LRLWDAT +I
Sbjct: 1195 LRLWDATTSI 1204
>ref|NP_175333.2| unknown protein; protein id: At1g49040.1, supported by cDNA:
gi_19743727 [Arabidopsis thaliana]
gi|19743728|gb|AAL92456.1| stomatal cytokinesis defective
[Arabidopsis thaliana]
Length = 1187
Score = 104 bits (260), Expect = 5e-22
Identities = 49/70 (70%), Positives = 57/70 (81%)
Frame = -2
Query: 507 DNSSSLFHRPPERLGGFSGTGSQMAGWQLYRTPPKTVAMVRCIASDLERKRICSGGRNGL 328
DNS SLFHRP S G++++GWQLYR P +T A+VRC+ASDLERKRICSGGRNG+
Sbjct: 1125 DNSMSLFHRP-------SNAGTKVSGWQLYRVPQRTAAVVRCVASDLERKRICSGGRNGV 1177
Query: 327 LRLWDATINI 298
LRLWDATINI
Sbjct: 1178 LRLWDATINI 1187
>gb|AAF69703.1|AC016041_8 F27J15.17 [Arabidopsis thaliana]
Length = 241
Score = 104 bits (260), Expect = 5e-22
Identities = 49/70 (70%), Positives = 57/70 (81%)
Frame = -2
Query: 507 DNSSSLFHRPPERLGGFSGTGSQMAGWQLYRTPPKTVAMVRCIASDLERKRICSGGRNGL 328
DNS SLFHRP S G++++GWQLYR P +T A+VRC+ASDLERKRICSGGRNG+
Sbjct: 179 DNSMSLFHRP-------SNAGTKVSGWQLYRVPQRTAAVVRCVASDLERKRICSGGRNGV 231
Query: 327 LRLWDATINI 298
LRLWDATINI
Sbjct: 232 LRLWDATINI 241
>ref|NP_567317.2| score=37.6, E=2.9e-07, N=3; protein id: At4g07410.1, supported by
cDNA: gi_19347783 [Arabidopsis thaliana]
gi|19347784|gb|AAL86343.1| unknown protein [Arabidopsis
thaliana] gi|22136758|gb|AAM91698.1| unknown protein
[Arabidopsis thaliana]
Length = 815
Score = 33.5 bits (75), Expect = 1.4
Identities = 15/38 (39%), Positives = 21/38 (54%)
Frame = -2
Query: 420 YRTPPKTVAMVRCIASDLERKRICSGGRNGLLRLWDAT 307
YR+ P+ + + KRI SG +GL+R WDAT
Sbjct: 191 YRSLPRVSGRALSVTWSPDAKRIFSGSSDGLIRCWDAT 228
>dbj|BAC05789.1| seven transmembrane helix receptor [Homo sapiens]
Length = 305
Score = 32.7 bits (73), Expect = 2.4
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +2
Query: 224 FIKRLAFHLQNCVTNVNKAHI---TRAQILMVASHSLRSPLRPPLHILFLSRSEAIHLTM 394
FIKR L+ C+T + H T A +LMV ++ + PLH + + L +
Sbjct: 84 FIKRKVISLKGCLTQMFSLHFFGGTEAFLLMVMAYDRYVAICKPLHYMAIMNQRMCGLLV 143
Query: 395 ATVFGGVL 418
+GG L
Sbjct: 144 RIAWGGGL 151
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,794,240
Number of Sequences: 1393205
Number of extensions: 10454971
Number of successful extensions: 26221
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 25078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26196
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
