Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008593A_C01 KMC008593A_c01
(646 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO42129.1| unknown protein [Arabidopsis thaliana] 107 2e-22
ref|NP_182306.1| unknown protein; protein id: At2g47850.1 [Arabi... 107 2e-22
dbj|BAB07996.1| putative zinc finger protein [Oryza sativa (japo... 62 9e-09
dbj|BAB07983.1| putative zinc finger protein [Oryza sativa (japo... 60 3e-08
ref|NP_197356.1| zinc finger -like protein; protein id: At5g1855... 48 1e-04
>gb|AAO42129.1| unknown protein [Arabidopsis thaliana]
Length = 151
Score = 107 bits (266), Expect = 2e-22
Identities = 58/108 (53%), Positives = 76/108 (69%), Gaps = 1/108 (0%)
Frame = -3
Query: 644 HPLGSMRYSPSTSSLIDVPVAPYPVGSLLSNLAPLTASSELRPELKSGSKNESFSTRMPS 465
HP+G++RY+PS SSL D PVAPYPV SLL LA +SS EL +G +++ T +P+
Sbjct: 43 HPMGTIRYNPSASSLADAPVAPYPVSSLLGALAAAPSSSS--TELIAGGAKDAYMTGVPT 100
Query: 464 SGNSSGASVGLIFSQ-GGSVSLSDVQLSTQSSTPLNSSRSTRQSGDIR 324
S ++S S GLIFSQ GGS+ S++QLS+QSS PL SR TRQ +IR
Sbjct: 101 SRSTSNISAGLIFSQSGGSIPFSELQLSSQSSLPLTGSRITRQGREIR 148
>ref|NP_182306.1| unknown protein; protein id: At2g47850.1 [Arabidopsis thaliana]
gi|25409067|pir||C84920 hypothetical protein At2g47850
[imported] - Arabidopsis thaliana
gi|3738297|gb|AAC63639.1| unknown protein [Arabidopsis
thaliana]
Length = 553
Score = 107 bits (266), Expect = 2e-22
Identities = 58/108 (53%), Positives = 76/108 (69%), Gaps = 1/108 (0%)
Frame = -3
Query: 644 HPLGSMRYSPSTSSLIDVPVAPYPVGSLLSNLAPLTASSELRPELKSGSKNESFSTRMPS 465
HP+G++RY+PS SSL D PVAPYPV SLL LA +SS EL +G +++ T +P+
Sbjct: 445 HPMGTIRYNPSASSLADAPVAPYPVSSLLGALAAAPSSSS--TELIAGGAKDAYMTGVPT 502
Query: 464 SGNSSGASVGLIFSQ-GGSVSLSDVQLSTQSSTPLNSSRSTRQSGDIR 324
S ++S S GLIFSQ GGS+ S++QLS+QSS PL SR TRQ +IR
Sbjct: 503 SRSTSNISAGLIFSQSGGSIPFSELQLSSQSSLPLTGSRITRQGREIR 550
>dbj|BAB07996.1| putative zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 360
Score = 61.6 bits (148), Expect = 9e-09
Identities = 36/99 (36%), Positives = 55/99 (55%)
Frame = -3
Query: 644 HPLGSMRYSPSTSSLIDVPVAPYPVGSLLSNLAPLTASSELRPELKSGSKNESFSTRMPS 465
HP+G++ YSPS L D+P+APYP+G ++ LAP + S +LRPE S + S +
Sbjct: 262 HPMGTLGYSPSALPLSDMPIAPYPIGFSIATLAPSSPSPDLRPEYIS---TKDQSVNQVT 318
Query: 464 SGNSSGASVGLIFSQGGSVSLSDVQLSTQSSTPLNSSRS 348
S ++ VG I +G V +D + Q++T S S
Sbjct: 319 SPVAASEPVGSILPKG--VFPADTMMRAQTNTTSGGSSS 355
>dbj|BAB07983.1| putative zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 451
Score = 59.7 bits (143), Expect = 3e-08
Identities = 32/87 (36%), Positives = 54/87 (61%), Gaps = 3/87 (3%)
Frame = -3
Query: 644 HPLGSMRYSPSTSSLIDVPVAPYPVGSLLSNLAPLTASSELRPE---LKSGSKNESFSTR 474
HP+G++ YSPS SS+ D+P+APYP+ ++ +AP ++SS+LRPE K S N+S
Sbjct: 344 HPMGTLSYSPSASSITDLPIAPYPLNYAVAPVAPPSSSSDLRPEYLLTKEFSANQS---- 399
Query: 473 MPSSGNSSGASVGLIFSQGGSVSLSDV 393
S G + G + ++ + +S+S +
Sbjct: 400 -ASPGTTCGPAGAMLKASTYPLSISSL 425
>ref|NP_197356.1| zinc finger -like protein; protein id: At5g18550.1 [Arabidopsis
thaliana]
Length = 456
Score = 47.8 bits (112), Expect = 1e-04
Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Frame = -3
Query: 644 HPLGS--MRYSPSTSSLIDVPVAPYPVGSLLSNLAPLTASSELRPELKSGSKNESFSTRM 471
H LGS + YSPS SSL D+PVAPYP S L LAP ++SS+ EL S S E +T
Sbjct: 361 HSLGSSSLSYSPSPSSLTDMPVAPYP--SSLGTLAP-SSSSDQCTELISSSSIEPITT-- 415
Query: 470 PSSGNSSGASVGLIFSQGGSVSLSDVQLSTQSSTPLNSSRST 345
++G S + G + S VS + + + + N ++++
Sbjct: 416 -TTGGSETVAAG-VSSMTSDVSHPEPAETNKGDSASNEAKTS 455
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,699,420
Number of Sequences: 1393205
Number of extensions: 10623879
Number of successful extensions: 30578
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 29014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30382
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
