Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008553A_C01 KMC008553A_c01
(659 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566657.1| expressed protein; protein id: At3g20290.1, sup... 240 1e-62
dbj|BAB02809.1| contains similarity to EH domain containing prot... 240 1e-62
ref|NP_567299.1| score=11.7, E=0.66,N=1; protein id: At4g05520.1... 133 2e-30
gb|AAG28784.1|AF307137_1 EH domain-containing protein FKSG7 [Hom... 132 3e-30
ref|NP_644670.1| EH-domain containing 4; EH domain containing 4 ... 132 5e-30
>ref|NP_566657.1| expressed protein; protein id: At3g20290.1, supported by cDNA:
gi_14334439 [Arabidopsis thaliana]
gi|14334440|gb|AAK59418.1| unknown protein [Arabidopsis
thaliana] gi|28394001|gb|AAO42408.1| unknown protein
[Arabidopsis thaliana]
Length = 545
Score = 240 bits (612), Expect = 1e-62
Identities = 115/137 (83%), Positives = 129/137 (93%)
Frame = -1
Query: 635 LGRDLFEKEQNDLLADLVDIPKKAVDRRINEFVKRARSAKIHAYIISHLKKEMPAIMGKA 456
+GR+LFEKEQ+DLLADL DIPKKA DRRINEFVKRAR+AKIHAYIISHLKKEMPAIMGKA
Sbjct: 409 IGRELFEKEQDDLLADLKDIPKKACDRRINEFVKRARAAKIHAYIISHLKKEMPAIMGKA 468
Query: 455 KAQQKLIDNLDVEFAKVQREYHLPAGDFPNVEHFKEVLSRYSIDKFEKLKPKMIQAVDDM 276
KAQQKLIDNL+ EF KVQRE+HLP GDFPNV+HF+EVLS Y+IDKFEKLKPKM+Q VDDM
Sbjct: 469 KAQQKLIDNLEDEFGKVQREHHLPKGDFPNVDHFREVLSGYNIDKFEKLKPKMLQTVDDM 528
Query: 275 LGYEIPELLRKFRNPYE 225
LGY+IPELL+ F+NPY+
Sbjct: 529 LGYDIPELLKNFKNPYD 545
>dbj|BAB02809.1| contains similarity to EH domain containing
proteins~gene_id:MQC12.3 [Arabidopsis thaliana]
Length = 524
Score = 240 bits (612), Expect = 1e-62
Identities = 115/137 (83%), Positives = 129/137 (93%)
Frame = -1
Query: 635 LGRDLFEKEQNDLLADLVDIPKKAVDRRINEFVKRARSAKIHAYIISHLKKEMPAIMGKA 456
+GR+LFEKEQ+DLLADL DIPKKA DRRINEFVKRAR+AKIHAYIISHLKKEMPAIMGKA
Sbjct: 388 IGRELFEKEQDDLLADLKDIPKKACDRRINEFVKRARAAKIHAYIISHLKKEMPAIMGKA 447
Query: 455 KAQQKLIDNLDVEFAKVQREYHLPAGDFPNVEHFKEVLSRYSIDKFEKLKPKMIQAVDDM 276
KAQQKLIDNL+ EF KVQRE+HLP GDFPNV+HF+EVLS Y+IDKFEKLKPKM+Q VDDM
Sbjct: 448 KAQQKLIDNLEDEFGKVQREHHLPKGDFPNVDHFREVLSGYNIDKFEKLKPKMLQTVDDM 507
Query: 275 LGYEIPELLRKFRNPYE 225
LGY+IPELL+ F+NPY+
Sbjct: 508 LGYDIPELLKNFKNPYD 524
>ref|NP_567299.1| score=11.7, E=0.66,N=1; protein id: At4g05520.1 [Arabidopsis
thaliana] gi|25407346|pir||D85069 hypothetical protein
AT4g05520 [imported] - Arabidopsis thaliana
gi|5732069|gb|AAD48968.1|AF147263_10 contains similarity
to Pfam family PF00036 - EF hand; score=11.7, E=0.66,N=1
[Arabidopsis thaliana] gi|7267312|emb|CAB81094.1|
contains similarity to Pfam family PF00036 - EF hand,
score=11.7, E=0.66, N=1~strong similarity to~Contains
ATP/GTP-binding site motif A (P-loop) AA221-228
[Arabidopsis thaliana]
Length = 514
Score = 133 bits (334), Expect = 2e-30
Identities = 63/83 (75%), Positives = 78/83 (93%)
Frame = -1
Query: 635 LGRDLFEKEQNDLLADLVDIPKKAVDRRINEFVKRARSAKIHAYIISHLKKEMPAIMGKA 456
+G++LFEKEQNDLLADL+D+PKKA DR+INEFVKRARSAKI+AYI+SHLKKEMPA+MGK+
Sbjct: 431 IGKELFEKEQNDLLADLMDVPKKACDRKINEFVKRARSAKINAYIMSHLKKEMPAMMGKS 490
Query: 455 KAQQKLIDNLDVEFAKVQREYHL 387
KAQQ+L+DNL+ EF KV++ HL
Sbjct: 491 KAQQRLMDNLEEEFGKVRKISHL 513
>gb|AAG28784.1|AF307137_1 EH domain-containing protein FKSG7 [Homo sapiens]
Length = 541
Score = 132 bits (333), Expect = 3e-30
Identities = 64/127 (50%), Positives = 88/127 (68%)
Frame = -1
Query: 629 RDLFEKEQNDLLADLVDIPKKAVDRRINEFVKRARSAKIHAYIISHLKKEMPAIMGKAKA 450
R LFE E DL D+ +P+KA R+IN+ +KRAR AK+HAYIIS+LKKEMP++ GK
Sbjct: 271 RRLFEAEAQDLFRDIQSLPQKAAVRKINDLIKRARLAKVHAYIISYLKKEMPSVFGKENK 330
Query: 449 QQKLIDNLDVEFAKVQREYHLPAGDFPNVEHFKEVLSRYSIDKFEKLKPKMIQAVDDMLG 270
+++LI L + ++QREY + AGDFP V+ +E L Y KF LKPK+I+AVD+ML
Sbjct: 331 KRELISRLPEIYIQLQREYQISAGDFPEVKAMQEQLENYDFTKFHSLKPKLIEAVDNMLS 390
Query: 269 YEIPELL 249
+I L+
Sbjct: 391 NKISPLM 397
>ref|NP_644670.1| EH-domain containing 4; EH domain containing 4 [Homo sapiens]
gi|18202935|sp|Q9H223|EHD4_HUMAN EH-domain containing
protein 4 (EH domain-containing protein FKSG7)
(Hepatocellular carcinoma-associated protein 10/11)
gi|13021980|gb|AAK11599.1| hepatocellular
carcinoma-associated protein HCA11 [Homo sapiens]
gi|13623377|gb|AAH06287.1|AAH06287 Unknown (protein for
MGC:10536) [Homo sapiens]
gi|17981589|gb|AAL51079.1|AF454953_1 EH
domain-containing protein-4 [Homo sapiens]
Length = 541
Score = 132 bits (331), Expect = 5e-30
Identities = 63/127 (49%), Positives = 88/127 (68%)
Frame = -1
Query: 629 RDLFEKEQNDLLADLVDIPKKAVDRRINEFVKRARSAKIHAYIISHLKKEMPAIMGKAKA 450
R LFE E DL D+ +P+KA R++N+ +KRAR AK+HAYIIS+LKKEMP++ GK
Sbjct: 271 RRLFEAEAQDLFRDIQSLPQKAAVRKLNDLIKRARLAKVHAYIISYLKKEMPSVFGKENK 330
Query: 449 QQKLIDNLDVEFAKVQREYHLPAGDFPNVEHFKEVLSRYSIDKFEKLKPKMIQAVDDMLG 270
+++LI L + ++QREY + AGDFP V+ +E L Y KF LKPK+I+AVD+ML
Sbjct: 331 KRELISRLPEIYIQLQREYQISAGDFPEVKAMQEQLENYDFTKFHSLKPKLIEAVDNMLS 390
Query: 269 YEIPELL 249
+I L+
Sbjct: 391 NKISPLM 397
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,472,186
Number of Sequences: 1393205
Number of extensions: 10180410
Number of successful extensions: 23720
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 22738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23708
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
