Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008532A_C01 KMC008532A_c01
(626 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD28640.2| geranylgeranyl hydrogenase [Glycine max] 340 7e-93
emb|CAA07683.1| geranylgeranyl reductase [Nicotiana tabacum] 290 1e-77
emb|CAA74372.1| geranylgeranyl reductase [Arabidopsis thaliana] 275 5e-73
ref|NP_177587.1| geranylgeranyl reductase; protein id: At1g74470... 271 4e-72
gb|AAN31803.1| putative geranylgeranyl reductase [Arabidopsis th... 270 1e-71
>gb|AAD28640.2| geranylgeranyl hydrogenase [Glycine max]
Length = 462
Score = 340 bits (873), Expect = 7e-93
Identities = 165/189 (87%), Positives = 176/189 (92%)
Frame = +2
Query: 59 MNSIALKSFVGLRQSSPEAPHFSVQLKPNAPRRNFKVLAGKFSPKLQGRNLRVAVVGGGP 238
MNSIA KSFVGLRQSSPEAPHF+ Q +P P R F+VLAGKFSPKL GRNLRVAVVGGGP
Sbjct: 1 MNSIAFKSFVGLRQSSPEAPHFAAQPRPATPHRKFRVLAGKFSPKLNGRNLRVAVVGGGP 60
Query: 239 AGGAAAETLSKAGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISP 418
AGGAAAETL+K G+ETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISP
Sbjct: 61 AGGAAAETLAKGGVETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISP 120
Query: 419 SNVAVDIGRTLKPHEYIGMVRREVLDAYLRDRAKQNGAEIINGLFLKMDVPVDKVTPYVL 598
SNVAVDIGRTLKPHEYIGMVRREVLDAYLRDRAK+ GA +INGLFLKMD+P DK +PYVL
Sbjct: 121 SNVAVDIGRTLKPHEYIGMVRREVLDAYLRDRAKEYGANVINGLFLKMDIPKDKNSPYVL 180
Query: 599 HYTAYDGKT 625
HY++YDGKT
Sbjct: 181 HYSSYDGKT 189
>emb|CAA07683.1| geranylgeranyl reductase [Nicotiana tabacum]
Length = 464
Score = 290 bits (742), Expect = 1e-77
Identities = 148/193 (76%), Positives = 163/193 (83%), Gaps = 4/193 (2%)
Frame = +2
Query: 59 MNSIALKSFVGLRQSSPEAPHFSVQLKPNAP----RRNFKVLAGKFSPKLQGRNLRVAVV 226
M SIALK+F GLRQSSPE + S+ L + P R ++ A K SP++ GRNLRVAVV
Sbjct: 1 MASIALKTFTGLRQSSPE--NNSITLSKSLPFTQTHRRLRINASKSSPRVNGRNLRVAVV 58
Query: 227 GGGPAGGAAAETLSKAGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMK 406
GGGPAGGAAAETL+K GIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDR+VTKMK
Sbjct: 59 GGGPAGGAAAETLAKGGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMK 118
Query: 407 MISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRDRAKQNGAEIINGLFLKMDVPVDKVT 586
MISPSNVAVDIG+TLKPHEYIGMVRREVLDAYLRDRA + GA ++NGLFLKMD+P
Sbjct: 119 MISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRDRAAEAGASVLNGLFLKMDMPKAPNA 178
Query: 587 PYVLHYTAYDGKT 625
PYVLHYTAYD KT
Sbjct: 179 PYVLHYTAYDSKT 191
>emb|CAA74372.1| geranylgeranyl reductase [Arabidopsis thaliana]
Length = 472
Score = 275 bits (702), Expect = 5e-73
Identities = 140/196 (71%), Positives = 161/196 (81%), Gaps = 4/196 (2%)
Frame = +2
Query: 50 TTTMNSIALKSFVGLRQSSPEAPHF--SVQLKPNAPRR--NFKVLAGKFSPKLQGRNLRV 217
TT ++ LKSF GLRQSS E +F V + P+R + +V A + +PKL R LRV
Sbjct: 4 TTMATTVTLKSFTGLRQSSTEQTNFVSHVPSSLSLPQRRTSLRVTAARATPKLSNRKLRV 63
Query: 218 AVVGGGPAGGAAAETLSKAGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVT 397
AV+GGGPAGGAAAETL++ GIET LIERKMDNCKPCGGAIPLCMVGEF+LPLDIIDRRVT
Sbjct: 64 AVIGGGPAGGAAAETLAQGGIETILIERKMDNCKPCGGAIPLCMVGEFNLPLDIIDRRVT 123
Query: 398 KMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRDRAKQNGAEIINGLFLKMDVPVD 577
KMKMISPSN+AVDIGRTLK HEYIGMVRREVLDAYLR+RA+++GA +INGLFLKMD P +
Sbjct: 124 KMKMISPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPEN 183
Query: 578 KVTPYVLHYTAYDGKT 625
+PY LHYT YDGKT
Sbjct: 184 WDSPYTLHYTEYDGKT 199
>ref|NP_177587.1| geranylgeranyl reductase; protein id: At1g74470.1, supported by
cDNA: gi_15292918, supported by cDNA: gi_15450454,
supported by cDNA: gi_16648980, supported by cDNA:
gi_18700166, supported by cDNA: gi_20259040, supported
by cDNA: gi_20857315 [Arabidopsis thaliana]
gi|25326665|pir||F96773 geranylgeranyl reductase,
47568-49165 [imported] - Arabidopsis thaliana
gi|12324810|gb|AAG52372.1|AC011765_24 geranylgeranyl
reductase; 47568-49165 [Arabidopsis thaliana]
gi|15292919|gb|AAK92830.1| putative geranylgeranyl
reductase [Arabidopsis thaliana]
gi|15450455|gb|AAK96521.1| At1g74470/F1M20_15
[Arabidopsis thaliana] gi|16648981|gb|AAL24342.1|
geranylgeranyl reductase [Arabidopsis thaliana]
gi|18700167|gb|AAL77695.1| At1g74470/F1M20_15
[Arabidopsis thaliana] gi|20259041|gb|AAM14236.1|
putative geranylgeranyl reductase [Arabidopsis thaliana]
gi|20857316|gb|AAM26711.1| At1g74470/F1M20_15
[Arabidopsis thaliana] gi|23397186|gb|AAN31876.1|
putative geranylgeranyl reductase [Arabidopsis thaliana]
gi|27311931|gb|AAO00931.1| geranylgeranyl reductase
[Arabidopsis thaliana]
Length = 467
Score = 271 bits (694), Expect = 4e-72
Identities = 138/191 (72%), Positives = 159/191 (82%), Gaps = 4/191 (2%)
Frame = +2
Query: 65 SIALKSFVGLRQSSPEAPHF--SVQLKPNAPRR--NFKVLAGKFSPKLQGRNLRVAVVGG 232
++ LKSF GLRQSS E +F V + P+R + +V A + +PKL R LRVAV+GG
Sbjct: 4 TVTLKSFTGLRQSSTEQTNFVSHVPSSLSLPQRRTSLRVTAARATPKLSNRKLRVAVIGG 63
Query: 233 GPAGGAAAETLSKAGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMI 412
GPAGGAAAETL++ GIET LIERKMDNCKPCGGAIPLCMVGEF+LPLDIIDRRVTKMKMI
Sbjct: 64 GPAGGAAAETLAQGGIETILIERKMDNCKPCGGAIPLCMVGEFNLPLDIIDRRVTKMKMI 123
Query: 413 SPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRDRAKQNGAEIINGLFLKMDVPVDKVTPY 592
SPSN+AVDIGRTLK HEYIGMVRREVLDAYLR+RA+++GA +INGLFLKMD P + +PY
Sbjct: 124 SPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPENWDSPY 183
Query: 593 VLHYTAYDGKT 625
LHYT YDGKT
Sbjct: 184 TLHYTEYDGKT 194
>gb|AAN31803.1| putative geranylgeranyl reductase [Arabidopsis thaliana]
Length = 467
Score = 270 bits (689), Expect = 1e-71
Identities = 137/190 (72%), Positives = 158/190 (83%), Gaps = 4/190 (2%)
Frame = +2
Query: 65 SIALKSFVGLRQSSPEAPHF--SVQLKPNAPRR--NFKVLAGKFSPKLQGRNLRVAVVGG 232
++ LKSF GLRQSS E +F V + P+R + +V A + +PKL R LRVAV+GG
Sbjct: 4 TVTLKSFTGLRQSSTEQTNFVSHVPSSLSLPQRRTSLRVTAARATPKLSNRKLRVAVIGG 63
Query: 233 GPAGGAAAETLSKAGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMI 412
GPAGGAAAETL++ GIET LIERKMDNCKPCGGAIPLCMVGEF+LPLDIIDRRVTKMKMI
Sbjct: 64 GPAGGAAAETLAQGGIETILIERKMDNCKPCGGAIPLCMVGEFNLPLDIIDRRVTKMKMI 123
Query: 413 SPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRDRAKQNGAEIINGLFLKMDVPVDKVTPY 592
SPSN+AVDIGRTLK HEYIGMVRREVLDAYLR+RA+++GA +INGLFLKMD P + +PY
Sbjct: 124 SPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPENWDSPY 183
Query: 593 VLHYTAYDGK 622
LHYT YDGK
Sbjct: 184 TLHYTEYDGK 193
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 663,708,752
Number of Sequences: 1393205
Number of extensions: 18531403
Number of successful extensions: 167298
Number of sequences better than 10.0: 2742
Number of HSP's better than 10.0 without gapping: 91893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148552
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
