Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008527A_C01 KMC008527A_c01
(776 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568317.1| mitochondrial carrier protein family; protein i... 158 9e-38
gb|AAM63042.1| putative mitochondrial carrier protein [Arabidops... 158 9e-38
pir||T51393 probable mitochondrial carrier protein - Arabidopsis... 158 9e-38
gb|AAM47577.1| putative mitochondrial carrier protein [Sorghum b... 141 9e-33
gb|AAG48999.1| putative mitochondrial carrier protein [Hordeum v... 137 2e-31
>ref|NP_568317.1| mitochondrial carrier protein family; protein id: At5g15640.1,
supported by cDNA: 18738., supported by cDNA:
gi_18252182, supported by cDNA: gi_20258916 [Arabidopsis
thaliana] gi|15292889|gb|AAK92815.1| putative
mitochondrial carrier protein [Arabidopsis thaliana]
gi|18252183|gb|AAL61924.1| putative mitochondrial
carrier protein [Arabidopsis thaliana]
gi|20258917|gb|AAM14152.1| putative mitochondrial
carrier protein [Arabidopsis thaliana]
gi|21386943|gb|AAM47875.1| putative mitochondrial
carrier protein [Arabidopsis thaliana]
Length = 323
Score = 158 bits (399), Expect = 9e-38
Identities = 80/96 (83%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Frame = -2
Query: 769 PSLPKIIFVQAAGGIIAGATASCITTPLDTIKTRLQVMGH-EQRSSVKQVVKDLIKEDGW 593
PS KI+ VQAAGGIIAGATAS ITTPLDTIKTRLQVMGH E R S KQVVK L+ EDGW
Sbjct: 228 PSKSKIVMVQAAGGIIAGATASSITTPLDTIKTRLQVMGHQENRPSAKQVVKKLLAEDGW 287
Query: 592 KGVYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDD 485
KG YRGLGPRFFSMSAWGTSMIL YEYLKRLCA +D
Sbjct: 288 KGFYRGLGPRFFSMSAWGTSMILTYEYLKRLCAIED 323
Score = 45.8 bits (107), Expect = 7e-04
Identities = 35/111 (31%), Positives = 50/111 (44%), Gaps = 9/111 (8%)
Frame = -2
Query: 763 LPKIIFVQAAGGIIAGATASCITTPLDTIKTRLQVMGHE-QRSSVKQVVKDLIKEDGWKG 587
L K F G+ G T + P+ +KTRLQV E S VVK ++K DG G
Sbjct: 22 LDKRRFYINGAGLFTGVTVALY--PVSVVKTRLQVASKEIAERSAFSVVKGILKNDGVPG 79
Query: 586 VYRGLG--------PRFFSMSAWGTSMILAYEYLKRLCAKDDETAGLQTGI 458
+YRG G R ++A T+ I A++ + L + A + GI
Sbjct: 80 LYRGFGTVITGAVPARIIFLTALETTKISAFKLVAPLELSEPTQAAIANGI 130
Score = 34.7 bits (78), Expect = 1.6
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Frame = -2
Query: 724 IAGATAS----CITTPLDTIKTRLQVMGHEQRSSVK---QVVKDLIKEDGWKGVYRGLGP 566
IAG TAS + P+D + +L V G+ ++ V +IK G +G+YRG G
Sbjct: 130 IAGMTASLFSQAVFVPIDVVSQKLMVQGYSGHATYTGGIDVATKIIKSYGVRGLYRGFGL 189
Query: 565 RFF----SMSAWGTS 533
S +AW S
Sbjct: 190 SVMTYSPSSAAWWAS 204
>gb|AAM63042.1| putative mitochondrial carrier protein [Arabidopsis thaliana]
Length = 323
Score = 158 bits (399), Expect = 9e-38
Identities = 80/96 (83%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Frame = -2
Query: 769 PSLPKIIFVQAAGGIIAGATASCITTPLDTIKTRLQVMGH-EQRSSVKQVVKDLIKEDGW 593
PS KI+ VQAAGGIIAGATAS ITTPLDTIKTRLQVMGH E R S KQVVK L+ EDGW
Sbjct: 228 PSKSKIVMVQAAGGIIAGATASSITTPLDTIKTRLQVMGHQENRPSAKQVVKKLLAEDGW 287
Query: 592 KGVYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDD 485
KG YRGLGPRFFSMSAWGTSMIL YEYLKRLCA +D
Sbjct: 288 KGFYRGLGPRFFSMSAWGTSMILTYEYLKRLCAIED 323
Score = 45.8 bits (107), Expect = 7e-04
Identities = 35/111 (31%), Positives = 50/111 (44%), Gaps = 9/111 (8%)
Frame = -2
Query: 763 LPKIIFVQAAGGIIAGATASCITTPLDTIKTRLQVMGHE-QRSSVKQVVKDLIKEDGWKG 587
L K F G+ G T + P+ +KTRLQV E S VVK ++K DG G
Sbjct: 22 LDKRRFYINGAGLFTGVTVALY--PVSVVKTRLQVASKEIAERSAFSVVKGILKNDGVPG 79
Query: 586 VYRGLG--------PRFFSMSAWGTSMILAYEYLKRLCAKDDETAGLQTGI 458
+YRG G R ++A T+ I A++ + L + A + GI
Sbjct: 80 LYRGFGTVITGAVPARIIFLTALETTKISAFKLVAPLELSEPTQAAIANGI 130
Score = 36.2 bits (82), Expect = 0.54
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Frame = -2
Query: 724 IAGATAS----CITTPLDTIKTRLQVMGHEQRSSVK---QVVKDLIKEDGWKGVYRGLGP 566
IAG TAS + P+D + +L V G+ ++ V +IK G +G+YRG G
Sbjct: 130 IAGMTASLFSQAVFVPIDVVSQKLMVQGYSGHATYTGGIDVATKIIKSYGVRGLYRGFGL 189
Query: 565 RFF----SMSAW----GTSMILAYEYLKRLCAKDDETAGLQTGIISI 449
S +AW G+S + + +L D TA ++ I+ +
Sbjct: 190 SVMTYSPSSAAWWASYGSSQRVIWRFLGYGGDSDATTAPSKSKIVMV 236
>pir||T51393 probable mitochondrial carrier protein - Arabidopsis thaliana
gi|9755609|emb|CAC01763.1| putative mitochondrial
carrier protein [Arabidopsis thaliana]
Length = 353
Score = 158 bits (399), Expect = 9e-38
Identities = 80/96 (83%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Frame = -2
Query: 769 PSLPKIIFVQAAGGIIAGATASCITTPLDTIKTRLQVMGH-EQRSSVKQVVKDLIKEDGW 593
PS KI+ VQAAGGIIAGATAS ITTPLDTIKTRLQVMGH E R S KQVVK L+ EDGW
Sbjct: 258 PSKSKIVMVQAAGGIIAGATASSITTPLDTIKTRLQVMGHQENRPSAKQVVKKLLAEDGW 317
Query: 592 KGVYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDD 485
KG YRGLGPRFFSMSAWGTSMIL YEYLKRLCA +D
Sbjct: 318 KGFYRGLGPRFFSMSAWGTSMILTYEYLKRLCAIED 353
Score = 45.8 bits (107), Expect = 7e-04
Identities = 35/111 (31%), Positives = 50/111 (44%), Gaps = 9/111 (8%)
Frame = -2
Query: 763 LPKIIFVQAAGGIIAGATASCITTPLDTIKTRLQVMGHE-QRSSVKQVVKDLIKEDGWKG 587
L K F G+ G T + P+ +KTRLQV E S VVK ++K DG G
Sbjct: 22 LDKRRFYINGAGLFTGVTVALY--PVSVVKTRLQVASKEIAERSAFSVVKGILKNDGVPG 79
Query: 586 VYRGLG--------PRFFSMSAWGTSMILAYEYLKRLCAKDDETAGLQTGI 458
+YRG G R ++A T+ I A++ + L + A + GI
Sbjct: 80 LYRGFGTVITGAVPARIIFLTALETTKISAFKLVAPLELSEPTQAAIANGI 130
Score = 34.7 bits (78), Expect = 1.6
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Frame = -2
Query: 724 IAGATAS----CITTPLDTIKTRLQVMGHEQRSSVK---QVVKDLIKEDGWKGVYRGLGP 566
IAG TAS + P+D + +L V G+ ++ V +IK G +G+YRG G
Sbjct: 130 IAGMTASLFSQAVFVPIDVVSQKLMVQGYSGHATYTGGIDVATKIIKSYGVRGLYRGFGL 189
Query: 565 RFF----SMSAWGTS 533
S +AW S
Sbjct: 190 SVMTYSPSSAAWWAS 204
>gb|AAM47577.1| putative mitochondrial carrier protein [Sorghum bicolor]
Length = 323
Score = 141 bits (356), Expect = 9e-33
Identities = 66/98 (67%), Positives = 80/98 (81%)
Frame = -2
Query: 775 DTPSLPKIIFVQAAGGIIAGATASCITTPLDTIKTRLQVMGHEQRSSVKQVVKDLIKEDG 596
+ PS K++ VQA+GG+ AGA S +TTP+DTIKTRLQVM +E + ++VVK LI EDG
Sbjct: 225 EAPSQLKLVGVQASGGVFAGAVTSFVTTPIDTIKTRLQVMDNENKPKAREVVKRLIAEDG 284
Query: 595 WKGVYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDDE 482
WKG+YRGLGPRFFS SAWGTSMI+ YEYLKRLCAK +E
Sbjct: 285 WKGLYRGLGPRFFSSSAWGTSMIVCYEYLKRLCAKVEE 322
Score = 42.4 bits (98), Expect = 0.008
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Frame = -2
Query: 748 FVQAAGGIIAGATASCITTPLDTIKTRLQVMGHEQRSSVK---QVVKDLIKEDGWKGVYR 578
F G+ A + I P+D I +L V G+ + K V + +IK DG +G+YR
Sbjct: 127 FANGLAGLSASTCSQAIFVPIDVISQKLMVQGYSGNARYKGGLDVARKVIKADGIRGLYR 186
Query: 577 GLGPRFFS--------MSAWGTSMILAYEYLKRLCAKDDETAGLQ 467
G G + +++G+S + + L L K++ + L+
Sbjct: 187 GFGLSVMTYAPSSAVWWASYGSSQRIIWSALGHLHDKEEAPSQLK 231
>gb|AAG48999.1| putative mitochondrial carrier protein [Hordeum vulgare subsp.
vulgare]
Length = 322
Score = 137 bits (344), Expect = 2e-31
Identities = 67/98 (68%), Positives = 81/98 (82%)
Frame = -2
Query: 775 DTPSLPKIIFVQAAGGIIAGATASCITTPLDTIKTRLQVMGHEQRSSVKQVVKDLIKEDG 596
DTPS KI+ VQA GG++AGA SC++TPLDTIKTRLQV ++ ++S +VV+ LI EDG
Sbjct: 226 DTPSQLKIVGVQATGGMVAGAVTSCVSTPLDTIKTRLQVNINKPKAS--EVVRRLIAEDG 283
Query: 595 WKGVYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDDE 482
WKG YRGLGPRFFS SAWGTSMI+ YEYLKR+CAK +E
Sbjct: 284 WKGFYRGLGPRFFSSSAWGTSMIVCYEYLKRVCAKVEE 321
Score = 42.7 bits (99), Expect = 0.006
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Frame = -2
Query: 733 GGIIAGATASCITTPLDTIKTRLQVMGHEQRSSVK---QVVKDLIKEDGWKGVYRGLGPR 563
GG+ A + + P+D + +L V G+ K VV+ ++K DG +G+YRG G
Sbjct: 133 GGLTASLCSQAVFVPIDVVSQKLMVQGYSGHVRYKGGIDVVQKIMKADGPRGLYRGFGLS 192
Query: 562 FFS--------MSAWGTSMILAYEYLKRLCAKDDETAGLQ 467
+ +++G S + + L RL K+D + L+
Sbjct: 193 VMTYAPSSAVWWASYGFSQRVIWSALGRLDDKEDTPSQLK 232
Score = 40.4 bits (93), Expect = 0.029
Identities = 21/57 (36%), Positives = 31/57 (53%), Gaps = 4/57 (7%)
Frame = -2
Query: 727 IIAGATASCITT---PLDTIKTRLQVM-GHEQRSSVKQVVKDLIKEDGWKGVYRGLG 569
++ SC+T P+ IKTR+QV G R + K+++K DG G+YRG G
Sbjct: 31 VVGAGMFSCVTVALYPVSVIKTRMQVASGEAMRRNALATFKNILKVDGVPGLYRGFG 87
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 684,555,593
Number of Sequences: 1393205
Number of extensions: 15051792
Number of successful extensions: 38774
Number of sequences better than 10.0: 767
Number of HSP's better than 10.0 without gapping: 35182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38162
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38375267554
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
