Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008504A_C01 KMC008504A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_627096.1| conserved hypothetical protein [Streptomyces co... 33 2.2
gb|EAA33586.1| predicted protein [Neurospora crassa] 32 6.3
gb|AAK07769.1|AF275908_3 putative N-methyl-aspartate receptor [B... 32 6.3
ref|NP_611032.1| CG16801-PB [Drosophila melanogaster] gi|2162715... 31 8.3
ref|NP_725457.1| CG16801-PA [Drosophila melanogaster] gi|7303078... 31 8.3
>ref|NP_627096.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
gi|7635974|emb|CAB88809.1| conserved hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 159
Score = 33.1 bits (74), Expect = 2.2
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = -1
Query: 169 GNFFDPRSHWPWWSRIV 119
GN FDP WPWW +V
Sbjct: 29 GNLFDPSERWPWWIELV 45
>gb|EAA33586.1| predicted protein [Neurospora crassa]
Length = 849
Score = 31.6 bits (70), Expect = 6.3
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Frame = +1
Query: 145 ETSGQKNFQDVE*VCKAICL*GKLTQTQGQW-TNRH*PNHTTQS-SLASIAIGHNLSS-- 312
+T+GQ++ Q ++ KA +L TQGQ +N H P T Q+ SL ++ G ++ S
Sbjct: 413 DTTGQRHQQPLQASLKAFLTHSRLDPTQGQMASNPHPPQLTNQAMSLLNVFKGDSVRSGH 472
Query: 313 -----TGKQRNRHPEPA 348
Q N HP+ A
Sbjct: 473 DRGLGVNTQENVHPQMA 489
>gb|AAK07769.1|AF275908_3 putative N-methyl-aspartate receptor [Babesia bovis]
gi|12802216|gb|AAK07774.1|AF275912_1 putative
N-methyl-aspartate receptor [Babesia bovis]
Length = 192
Score = 31.6 bits (70), Expect = 6.3
Identities = 26/73 (35%), Positives = 34/73 (45%), Gaps = 8/73 (10%)
Frame = -2
Query: 249 VSISPLTLGLSQFALETDCFANSFHVLEIFLTRGLTGHGGQGLSSIV--------FRF*C 94
V+ S L L + AL CFA F EI + G+T GL+ V F F
Sbjct: 47 VAFSLLALMTTCMALYLTCFACKFAPFEITVAAGITA----GLTLAVALFAFQTKFDFTG 102
Query: 93 YILYRLFVEVALV 55
YILY L + +AL+
Sbjct: 103 YILYLLIISIALL 115
>ref|NP_611032.1| CG16801-PB [Drosophila melanogaster] gi|21627158|gb|AAM68536.1|
CG16801-PB [Drosophila melanogaster]
Length = 744
Score = 31.2 bits (69), Expect = 8.3
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 323 NATDTQSPHRSEVTPQPVPRRGQLPPPRLT 412
N SP R TP P P GQ PPP T
Sbjct: 131 NPKKLHSPQRHCYTPPPAPMHGQAPPPTST 160
>ref|NP_725457.1| CG16801-PA [Drosophila melanogaster] gi|7303078|gb|AAF58145.1|
CG16801-PA [Drosophila melanogaster]
Length = 532
Score = 31.2 bits (69), Expect = 8.3
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 323 NATDTQSPHRSEVTPQPVPRRGQLPPPRLT 412
N SP R TP P P GQ PPP T
Sbjct: 131 NPKKLHSPQRHCYTPPPAPMHGQAPPPTST 160
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,389,331
Number of Sequences: 1393205
Number of extensions: 9311002
Number of successful extensions: 24020
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23983
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
