Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008425A_C01 KMC008425A_c01
(436 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196787.1| unknown protein; protein id: At5g12260.1 [Arabi... 41 0.003
dbj|BAB39953.1| hypothetical protein~similar to Arabidopsis thal... 33 0.62
gb|EAA15536.1| chloroquine resistance marker protein [Plasmodium... 32 1.4
gb|EAA21805.1| NLI interacting factor, putative [Plasmodium yoel... 32 2.4
pir||T07666 lipoxygenase (EC 1.13.11.12) L-1 - soybean (fragment... 30 5.2
>ref|NP_196787.1| unknown protein; protein id: At5g12260.1 [Arabidopsis thaliana]
gi|9759393|dbj|BAB10044.1| gene_id:MXC9.22~unknown
protein [Arabidopsis thaliana]
gi|21703127|gb|AAM74504.1| AT5g12260/MXC9_22
[Arabidopsis thaliana]
Length = 624
Score = 41.2 bits (95), Expect = 0.003
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = -3
Query: 392 SGNVSKSSLGD-KKFVYWSTEMEMDSIQKRLEELKFVGYRQ*LLSCTAVVCHSS 234
+ N SLGD K VYWS E+ + I+ +LEEL + LSC AVVCHSS
Sbjct: 572 NANSVNQSLGDGKPVVYWSPEVAPNMIRSKLEELS-LWLIDDDLSCKAVVCHSS 624
>dbj|BAB39953.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 5,
MXC9.22 [Oryza sativa (japonica cultivar-group)]
gi|15408821|dbj|BAB64213.1| P0581F09.10 [Oryza sativa
(japonica cultivar-group)]
Length = 609
Score = 33.5 bits (75), Expect = 0.62
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -3
Query: 428 RVDETSFGLKIGSGNVSKS-SLGDKKFVYWSTEMEMDSIQKRLEELKFVGYRQ*LLSCTA 252
++DE +++G ++S S G K ++WS M DS+Q +LE + + SC+A
Sbjct: 543 KLDEEIMAVELGPNTSNRSLSEGHCKVLFWSHSMTSDSVQSQLEN-RGLWLIDSDSSCSA 601
Query: 251 VVC 243
VVC
Sbjct: 602 VVC 604
>gb|EAA15536.1| chloroquine resistance marker protein [Plasmodium yoelii yoelii]
Length = 2788
Score = 32.3 bits (72), Expect = 1.4
Identities = 25/77 (32%), Positives = 37/77 (47%), Gaps = 1/77 (1%)
Frame = +1
Query: 127 KRICKLNWHKQNSELI*KGKEKE-KCITTSSCIKSASEL*QTTAVHDKSHCLYPTNFNSS 303
K IC L +NS LI K KEK+ KCI SS + S Q ++K+ + N N +
Sbjct: 998 KVICSL----ENSTLIKKEKEKKRKCIEGSSILSSNINTSQDHNQYEKNEYINENNINEN 1053
Query: 304 SRF*IESISISVDQYTN 354
+ S+ +Q +N
Sbjct: 1054 MLHNVNKYSLKNEQKSN 1070
>gb|EAA21805.1| NLI interacting factor, putative [Plasmodium yoelii yoelii]
Length = 328
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/64 (34%), Positives = 34/64 (52%), Gaps = 2/64 (3%)
Frame = +2
Query: 74 RVHIYHLIWLQMIIQNE*KEYVSLIGINRTQN*--YRKERKKKSV*LLLAASKVLVSCDK 247
RV IY IW+++ +N K + I R N YRK R S+ L+L + L+ C K
Sbjct: 16 RVKIYLRIWIKL--KNVMKYILGFFVIKRKLNVRTYRKRRTFPSMTLVLDLDETLIYCTK 73
Query: 248 QQQY 259
+++Y
Sbjct: 74 KKKY 77
>pir||T07666 lipoxygenase (EC 1.13.11.12) L-1 - soybean (fragment)
gi|170018|gb|AAA33989.1| lipoxygenase-1
Length = 325
Score = 30.4 bits (67), Expect = 5.2
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 303 EPFLN*VHLHFS*--PIYKLLIP*RRFTNITGPNLQAKRSLINS 428
EPF+ H H S PIYKLL P + N N A++SLIN+
Sbjct: 83 EPFVIATHRHLSVLHPIYKLLTP--HYRNNMNINALARQSLINA 124
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 354,133,011
Number of Sequences: 1393205
Number of extensions: 6887773
Number of successful extensions: 18724
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18711
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 6756111528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
