Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008404A_C01 KMC008404A_c01
(684 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568863.1| CONSTANS-like B-box zinc finger protein-like; p... 83 4e-15
gb|AAM65968.1| CONSTANS-like B-box zinc finger protein-like [Ara... 83 4e-15
gb|AAC99309.1| CONSTANS-like protein 1 [Malus x domestica] 79 4e-14
ref|NP_197875.1| CONSTANS B-box zinc finger family protein; prot... 77 3e-13
gb|AAC99310.1| CONSTANS-like protein 2 [Malus x domestica] 75 1e-12
>ref|NP_568863.1| CONSTANS-like B-box zinc finger protein-like; protein id:
At5g57660.1, supported by cDNA: 6639., supported by
cDNA: gi_16323056, supported by cDNA: gi_19347870,
supported by cDNA: gi_21281082 [Arabidopsis thaliana]
gi|16323057|gb|AAL15263.1| AT5g57660/MRI1_1 [Arabidopsis
thaliana] gi|19347871|gb|AAL85993.1| putative CONSTANS
B-box zinc finger protein [Arabidopsis thaliana]
gi|21281083|gb|AAM45054.1| putative CONSTANS B-box zinc
finger protein [Arabidopsis thaliana]
Length = 355
Score = 82.8 bits (203), Expect = 4e-15
Identities = 49/83 (59%), Positives = 57/83 (68%)
Frame = +1
Query: 79 SSFNYPSQSLSQSVSSSSLDVGVVTDGNAVLDMSYLNSSDSSGMVVSGGGGRQPATQLCG 258
S+F YPSQS+S SVS+SS++ GVV DGN NS + S + S GG A+
Sbjct: 232 SAFTYPSQSVSHSVSTSSIEYGVVPDGNTN------NSVNRSTITSSTTGGDHQASS--- 282
Query: 259 MDREARVLRYREKRKNRKFEKTI 327
MDREARVLRYREKRKNRKFEKTI
Sbjct: 283 MDREARVLRYREKRKNRKFEKTI 305
>gb|AAM65968.1| CONSTANS-like B-box zinc finger protein-like [Arabidopsis thaliana]
Length = 355
Score = 82.8 bits (203), Expect = 4e-15
Identities = 49/83 (59%), Positives = 57/83 (68%)
Frame = +1
Query: 79 SSFNYPSQSLSQSVSSSSLDVGVVTDGNAVLDMSYLNSSDSSGMVVSGGGGRQPATQLCG 258
S+F YPSQS+S SVS+SS++ GVV DGN NS + S + S GG A+
Sbjct: 232 SAFTYPSQSVSHSVSTSSIEYGVVPDGNTN------NSVNRSTITSSTTGGDHQASS--- 282
Query: 259 MDREARVLRYREKRKNRKFEKTI 327
MDREARVLRYREKRKNRKFEKTI
Sbjct: 283 MDREARVLRYREKRKNRKFEKTI 305
>gb|AAC99309.1| CONSTANS-like protein 1 [Malus x domestica]
Length = 340
Score = 79.3 bits (194), Expect = 4e-14
Identities = 52/102 (50%), Positives = 60/102 (57%), Gaps = 3/102 (2%)
Frame = +1
Query: 67 SPSSSSFNYP---SQSLSQSVSSSSLDVGVVTDGNAVLDMSYLNSSDSSGMVVSGGGGRQ 237
S +S F Y +Q L QSVSSSS+DV +V D NA+ D S + + V S
Sbjct: 214 SAASKPFVYGYHHAQCLRQSVSSSSMDVSIVPDDNAMTDDSNPYNKSMTSAVESS----H 269
Query: 238 PATQLCGMDREARVLRYREKRKNRKFEKTIFHPWLCKQTETR 363
PA QL DREARVLRYREKRKNRKFEKTI + ETR
Sbjct: 270 PAVQLSSADREARVLRYREKRKNRKFEKTIRYASRKAYAETR 311
>ref|NP_197875.1| CONSTANS B-box zinc finger family protein; protein id: At5g24930.1,
supported by cDNA: gi_15450658 [Arabidopsis thaliana]
Length = 362
Score = 76.6 bits (187), Expect = 3e-13
Identities = 47/87 (54%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Frame = +1
Query: 76 SSSFNYPS--QSLSQSVSSSSLDVGVVTDGNAVLDMSYLNSSDSSGMVVSGGG-GRQPAT 246
S F Y +S SVSSSS++VGVV DG +V D+SY G SG G Q A
Sbjct: 233 SKGFTYGGGYNCISHSVSSSSMEVGVVPDGGSVADVSY----PYGGPATSGADPGTQRAV 288
Query: 247 QLCGMDREARVLRYREKRKNRKFEKTI 327
L +REARV+RYREKRKNRKFEKTI
Sbjct: 289 PLTSAEREARVMRYREKRKNRKFEKTI 315
>gb|AAC99310.1| CONSTANS-like protein 2 [Malus x domestica]
Length = 329
Score = 74.7 bits (182), Expect = 1e-12
Identities = 47/89 (52%), Positives = 56/89 (62%)
Frame = +1
Query: 97 SQSLSQSVSSSSLDVGVVTDGNAVLDMSYLNSSDSSGMVVSGGGGRQPATQLCGMDREAR 276
++ LSQSVSSSS+D+ VV DGNAV ++ + S QPA QL +DR AR
Sbjct: 227 ARCLSQSVSSSSMDISVVPDGNAV----------TAAVETS-----QPAVQLSSVDRVAR 271
Query: 277 VLRYREKRKNRKFEKTIFHPWLCKQTETR 363
VLRYREKRKNRKFEKTI + ETR
Sbjct: 272 VLRYREKRKNRKFEKTIRYASRKAYAETR 300
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 688,085,447
Number of Sequences: 1393205
Number of extensions: 18098249
Number of successful extensions: 74226
Number of sequences better than 10.0: 208
Number of HSP's better than 10.0 without gapping: 63106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71933
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
