Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008395A_C01 KMC008395A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173355.2| AP2 domain transcription factor, putative; prot... 45 6e-04
pir||S20500 hydroxyproline-rich glycoprotein - rice gi|433816|em... 39 0.043
gb|ZP_00011279.1| hypothetical protein [Rhodopseudomonas palustris] 38 0.074
emb|CAC39318.1| VMP3 protein [Volvox carteri f. nagariensis] 28 0.46
pir||T05717 probable extensin - barley (fragment) gi|2950243|emb... 35 0.62
>ref|NP_173355.2| AP2 domain transcription factor, putative; protein id: At1g19210.1,
supported by cDNA: gi_12083251 [Arabidopsis thaliana]
gi|25518638|pir||F86325 hypothetical protein T7I23.7 -
Arabidopsis thaliana
gi|8954065|gb|AAF82238.1|AC069143_14 Contains similarity
to an AP2 domain containing protein RAP2.10 mRNA from
Arabidopsis thaliana gb|AF003103 and contains an AP2
PF|00847 domain. EST gb|AI996763 comes from this gene
gi|12083252|gb|AAG48785.1|AF332422_1 putative AP2 domain
transcription factor [Arabidopsis thaliana]
Length = 178
Score = 45.1 bits (105), Expect = 6e-04
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = -3
Query: 426 IGSGDFGSGYGLFPGF----DEFSGDFYVPELESLNYCEEENTDGYIIEDSFLWNF 271
+GSG+F S +GLFPGF DE+SGD + +L + + Y FLWNF
Sbjct: 123 VGSGNFASEFGLFPGFDDFSDEYSGDRFREQLSPTQDYYQLGEETYADGSMFLWNF 178
>pir||S20500 hydroxyproline-rich glycoprotein - rice gi|433816|emb|CAA43583.1|
hydroxyproline-rich glycoprotein [Oryza sativa]
Length = 369
Score = 38.9 bits (89), Expect = 0.043
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 390 KAHNPIQNHPTRSAQTNPAATRGSRRRHGPFEPSPQKHKATETPP-YPPTPFPPK 551
K H P P + T P T + P+ P P T TPP Y PTP PPK
Sbjct: 66 KEHKPPAYTPPKPTPTPPTYTPTPKPTPPPYTPKPTPPAHTPTPPTYTPTPTPPK 120
Score = 34.3 bits (77), Expect = 1.1
Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 417 PTRSAQTNPAATRGSRRRHGPFEPSPQKHKATETPP-YPPTPFPPKKK 557
PT Q P T + PSP K T TPP Y PTP PP K
Sbjct: 309 PTYKPQPKPTPTPTPYKPQPKPTPSPYTPKPTPTPPTYTPTPTPPYHK 356
>gb|ZP_00011279.1| hypothetical protein [Rhodopseudomonas palustris]
Length = 306
Score = 38.1 bits (87), Expect = 0.074
Identities = 20/60 (33%), Positives = 27/60 (44%)
Frame = +3
Query: 372 IHQTQEKAHNPIQNHPTRSAQTNPAATRGSRRRHGPFEPSPQKHKATETPPYPPTPFPPK 551
+ QT + P Q PT + + PA T+ P PQ+ TPP PP P PP+
Sbjct: 106 VSQTPTEQPKPQQQQPTPATKPQPAETKPP----APAPQPPQQSAQAPTPPPPPQPAPPQ 161
>emb|CAC39318.1| VMP3 protein [Volvox carteri f. nagariensis]
Length = 687
Score = 28.1 bits (61), Expect(2) = 0.46
Identities = 11/26 (42%), Positives = 12/26 (45%)
Frame = +3
Query: 477 PFEPSPQKHKATETPPYPPTPFPPKK 554
P P P T PP PP P PP +
Sbjct: 640 PSPPPPSPRPPTPPPPSPPPPRPPPR 665
Score = 26.2 bits (56), Expect(2) = 0.46
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +2
Query: 374 SSNPGKSP*PDPKSPDPIGANKSGSNPWFTPP 469
S NP P PDP SPDP A P PP
Sbjct: 576 SPNP---PSPDPPSPDPPSAPPPSPPPPSPPP 604
>pir||T05717 probable extensin - barley (fragment) gi|2950243|emb|CAB10894.1|
extensin [Hordeum vulgare]
Length = 330
Score = 35.0 bits (79), Expect = 0.62
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Frame = +3
Query: 417 PTRSAQTNPAATRGSRR-------RHGPFEPSPQKHK-ATETPPY--PPTPFPPKKK 557
PT AQ P T + + H P P+P HK AT TPP PPTP PP K
Sbjct: 222 PTPPAQKPPTPTPPAYKPPTPTPPAHKPPTPTPPAHKPATPTPPAHKPPTPTPPAHK 278
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,504,684
Number of Sequences: 1393205
Number of extensions: 13447508
Number of successful extensions: 64313
Number of sequences better than 10.0: 153
Number of HSP's better than 10.0 without gapping: 47662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61206
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
