Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008337A_C01 KMC008337A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181277.1| putative protein translocase; protein id: At2g3... 52 6e-06
gb|AAF03749.1|AF186847_1 TIM17 [Arabidopsis thaliana] 51 8e-06
ref|NP_173460.1| mitochondrial inner membrane translocase compon... 39 0.052
ref|NP_594630.1| putative histone acetyl transferase [Schizosacc... 34 0.98
ref|NP_478441.1| transposase [Nostoc sp. PCC 7120] gi|25535728|p... 33 1.7
>ref|NP_181277.1| putative protein translocase; protein id: At2g37410.1, supported by
cDNA: gi_13430691, supported by cDNA: gi_15810185,
supported by cDNA: gi_6103721 [Arabidopsis thaliana]
gi|12643851|sp|Q9SP35|IM17_ARATH Mitochondrial import
inner membrane translocase subunit TIM17
gi|25408549|pir||D84792 probable protein translocase
[imported] - Arabidopsis thaliana
gi|4056494|gb|AAC98060.1| putative protein translocase
[Arabidopsis thaliana]
gi|13430692|gb|AAK25968.1|AF360258_1 putative protein
translocase [Arabidopsis thaliana]
gi|14532896|gb|AAK64130.1| putative protein translocase
[Arabidopsis thaliana] gi|15810186|gb|AAL06994.1|
At2g37410/F3G5.20 [Arabidopsis thaliana]
Length = 243
Score = 51.6 bits (122), Expect = 6e-06
Identities = 25/42 (59%), Positives = 32/42 (75%)
Frame = -1
Query: 525 NSWFGGGWFGKKDEVAAGGDGGSETKVLESFDAPPVPDLEYK 400
+SWFGG + KK+EV G + S+T+VLESFDAPPVP E+K
Sbjct: 204 SSWFGGLFDKKKEEVQPGSE--SKTEVLESFDAPPVPSFEFK 243
>gb|AAF03749.1|AF186847_1 TIM17 [Arabidopsis thaliana]
Length = 243
Score = 51.2 bits (121), Expect = 8e-06
Identities = 25/42 (59%), Positives = 32/42 (75%)
Frame = -1
Query: 525 NSWFGGGWFGKKDEVAAGGDGGSETKVLESFDAPPVPDLEYK 400
+SWFGG + KK+EV G + S+T+VLESFDAPPVP E+K
Sbjct: 204 SSWFGGLFDKKKEEVHPGSE--SKTEVLESFDAPPVPSFEFK 243
>ref|NP_173460.1| mitochondrial inner membrane translocase component, putative;
protein id: At1g20350.1 [Arabidopsis thaliana]
gi|25332422|pir||C86337 hypothetical protein F14O10.5 -
Arabidopsis thaliana gi|9558591|gb|AAF88154.1|AC026234_5
Contains similarity to a mitochondrial inner membrane
translocase component Tim17b from Mus musculus
gb|AF106621. EST gb|AI998083 comes from this gene.
[Arabidopsis thaliana] gi|26451931|dbj|BAC43058.1|
unknown protein [Arabidopsis thaliana]
gi|28950759|gb|AAO63303.1| At1g20350 [Arabidopsis
thaliana]
Length = 218
Score = 38.5 bits (88), Expect = 0.052
Identities = 20/41 (48%), Positives = 24/41 (57%)
Frame = -1
Query: 522 SWFGGGWFGKKDEVAAGGDGGSETKVLESFDAPPVPDLEYK 400
SWFG + KK + S T +LESFDAPPVP E+K
Sbjct: 180 SWFGSLF--KKKKETEDHHSESRTHILESFDAPPVPTYEFK 218
>ref|NP_594630.1| putative histone acetyl transferase [Schizosaccharomyces pombe]
gi|7492650|pir||T39004 probable histone acetyl
transferase - fission yeast (Schizosaccharomyces pombe)
gi|4056556|emb|CAA22591.1| putative histone acetyl
transferase [Schizosaccharomyces pombe]
Length = 463
Score = 34.3 bits (77), Expect = 0.98
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 73 YRTKMLTHIPNIELKAKYIMVHKRLKGIVKI*YHNDLESFYKNYIWASINNQE*NKSFSH 252
Y++K+ KA+ +M+ KR +G+V ++ND W +I+N + +K +
Sbjct: 23 YKSKVFAFKDGEYRKAEILMIQKRTRGVVYYVHYNDYNKRLDE--WITIDNIDLSKGIEY 80
Query: 253 FPPHK 267
PP K
Sbjct: 81 PPPEK 85
>ref|NP_478441.1| transposase [Nostoc sp. PCC 7120] gi|25535728|pir||AI2552
transposase alr8016 [imported] - Nostoc sp. (strain PCC
7120) plasmid pCC7120gamma gi|17134789|dbj|BAB77346.1|
transposase [Nostoc sp. PCC 7120]
Length = 636
Score = 33.5 bits (75), Expect = 1.7
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 370 SLTLYPKLNSLVLEIGHRRGIKALQNLGLTSSITTSCNLI-LLPKPPTTEPRIL 528
+L L +LN++ L G G++ Q LG+ S T NL+ +P PP P L
Sbjct: 105 TLRLAQRLNAIALANGGAAGVRLSQQLGIKVSRNTLLNLVRSIPLPPIVTPHTL 158
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,080,907
Number of Sequences: 1393205
Number of extensions: 10584014
Number of successful extensions: 47293
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 40062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46854
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
