Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008307A_C01 KMC008307A_c01
(453 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB89490.1| CRK1 protein [Beta vulgaris] gi|7688002|emb|CAB8... 43 0.001
gb|AAK53824.1|AC011806_1 Putative protein with region similar to... 40 0.014
dbj|BAB64715.1| putative CRK1 protein [Oryza sativa (japonica cu... 40 0.014
dbj|BAC16638.1| putative CRK1 protein [Oryza sativa (japonica cu... 33 1.0
ref|NP_705107.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.9
>emb|CAB89490.1| CRK1 protein [Beta vulgaris] gi|7688002|emb|CAB89665.1| CRK1
protein [Beta vulgaris]
Length = 599
Score = 43.1 bits (100), Expect = 0.001
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -2
Query: 437 KQIIQTWSGPLVDPASMGAPRRKKKH 360
K + Q WSGPLVDPAS G PRRKKK+
Sbjct: 551 KGVGQHWSGPLVDPASAGGPRRKKKN 576
>gb|AAK53824.1|AC011806_1 Putative protein with region similar to cyclin-dependent kinase
like proteins [Oryza sativa]
Length = 270
Score = 39.7 bits (91), Expect = 0.014
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = -2
Query: 425 QTWSGPLVDPASMGAPRRKKK 363
QTWSGPLVDPA++G RRKK+
Sbjct: 226 QTWSGPLVDPAALGQSRRKKQ 246
>dbj|BAB64715.1| putative CRK1 protein [Oryza sativa (japonica cultivar-group)]
gi|15528679|dbj|BAB64745.1| putative CRK1 protein [Oryza
sativa (japonica cultivar-group)]
Length = 558
Score = 39.7 bits (91), Expect = 0.014
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = -2
Query: 425 QTWSGPLVDPASMGAPRRKKK 363
QTWSGPLVDPA++G RRKK+
Sbjct: 514 QTWSGPLVDPAALGQSRRKKQ 534
>dbj|BAC16638.1| putative CRK1 protein [Oryza sativa (japonica cultivar-group)]
gi|23495876|dbj|BAC20085.1| putative CRK1
protein(cdc2-related kinase 1) [Oryza sativa (japonica
cultivar-group)]
Length = 573
Score = 33.5 bits (75), Expect = 1.0
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = -2
Query: 437 KQIIQTWSGPLVDPASMGAPRRKKKHGR 354
K + TWSGPL DP+S G +RK K GR
Sbjct: 536 KGSVPTWSGPLADPSS-GNQKRKHKSGR 562
>ref|NP_705107.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615352|emb|CAD52343.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1486
Score = 31.6 bits (70), Expect = 3.9
Identities = 32/102 (31%), Positives = 51/102 (49%), Gaps = 13/102 (12%)
Frame = -3
Query: 349 EHMYNQRRI---------QKDKSQRNILVV*HQSFF----SNHEASSNVADFMSHI*LVK 209
E+MY R I +K + NI ++ Q+ F SNH SN ++I +V+
Sbjct: 302 ENMYISRDIFHQGFNITCRKFYNSNNIYIIKSQNSFIQNKSNHNYRSN-----NNIDVVR 356
Query: 208 SLVLEVIYIVFPAPISFTMIRGLFSILYIFNFFPLKFKSLIR 83
V + IY+ F A S+ + RG+ IFNF L+ K+L++
Sbjct: 357 KEVPK-IYVKFFANKSYLLWRGIEQNKEIFNFKLLELKNLLK 397
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,982,017
Number of Sequences: 1393205
Number of extensions: 7821680
Number of successful extensions: 20105
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20102
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
