Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008264A_C01 KMC008264A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD70621.1| polypyrimidine track-binding protein homologue [... 145 4e-34
ref|NP_175010.2| heterogeneous nuclear ribonucleoprotein (hnRNP)... 131 5e-30
dbj|BAB89791.1| P0677H08.6 [Oryza sativa (japonica cultivar-group)] 105 5e-22
ref|XP_229224.1| similar to Polypyrimidine tract-binding protein... 48 9e-05
ref|NP_114368.1| polypyrimidine tract-binding protein 1 isoform ... 47 2e-04
>emb|CAD70621.1| polypyrimidine track-binding protein homologue [Cicer arietinum]
Length = 442
Score = 145 bits (365), Expect = 4e-34
Identities = 79/128 (61%), Positives = 92/128 (71%), Gaps = 10/128 (7%)
Frame = -1
Query: 557 FSKHATITQGADTHEYSNSNLNRFNRNAAKNYRYCCSPTRMIHLSTLPQDVTEEEIASLV 378
FSKH I QGADTHEY NSNLNRFNRNAAKNYRYCCSPT++IHLSTLPQD+ EEEIASL+
Sbjct: 326 FSKHPNIIQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKIIHLSTLPQDIIEEEIASLL 385
Query: 377 EEHGTIVNCKV----------L*DESEETGSGSV*D*GAGY*SPRVQACHPRLSGSVIRI 228
EEHG +VNCKV + E+EE + ++ + SP LSGS++RI
Sbjct: 386 EEHGLVVNCKVFEMNGKKQALVQFETEEEATEAL---VCKHASP--------LSGSIVRI 434
Query: 227 SFSQLQNI 204
SFSQLQNI
Sbjct: 435 SFSQLQNI 442
Score = 58.9 bits (141), Expect = 4e-08
Identities = 29/49 (59%), Positives = 35/49 (71%)
Frame = -2
Query: 403 LRRRLRALLRSTEPLSTAKCFEMNQKKQALVQFETEEQATEALVCKHAT 257
+ + +LL + K FEMN KKQALVQFETEE+ATEALVCKHA+
Sbjct: 377 IEEEIASLLEEHGLVVNCKVFEMNGKKQALVQFETEEEATEALVCKHAS 425
>ref|NP_175010.2| heterogeneous nuclear ribonucleoprotein (hnRNP), putative; protein
id: At1g43190.1 [Arabidopsis thaliana]
Length = 432
Score = 131 bits (330), Expect = 5e-30
Identities = 72/128 (56%), Positives = 85/128 (66%), Gaps = 10/128 (7%)
Frame = -1
Query: 557 FSKHATITQGADTHEYSNSNLNRFNRNAAKNYRYCCSPTRMIHLSTLPQDVTEEEIASLV 378
FSKH IT G D+H+Y NSNLNRFNRNAAKNYRYCCSPT+MIHLSTLPQDVTEEE+ + V
Sbjct: 316 FSKHPNITPGTDSHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVMNHV 375
Query: 377 EEHGTIVNCKV----------L*DESEETGSGSV*D*GAGY*SPRVQACHPRLSGSVIRI 228
+EHG +VN KV + E+EE + ++ V L GS+IRI
Sbjct: 376 QEHGAVVNTKVFEMNGKKQALVQFENEEEAAEAL-----------VCKHATSLGGSIIRI 424
Query: 227 SFSQLQNI 204
SFSQLQ I
Sbjct: 425 SFSQLQTI 432
Score = 55.1 bits (131), Expect = 6e-07
Identities = 26/31 (83%), Positives = 27/31 (86%)
Frame = -2
Query: 349 KCFEMNQKKQALVQFETEEQATEALVCKHAT 257
K FEMN KKQALVQFE EE+A EALVCKHAT
Sbjct: 385 KVFEMNGKKQALVQFENEEEAAEALVCKHAT 415
>dbj|BAB89791.1| P0677H08.6 [Oryza sativa (japonica cultivar-group)]
Length = 664
Score = 105 bits (261), Expect = 5e-22
Identities = 55/118 (46%), Positives = 78/118 (65%)
Frame = -1
Query: 557 FSKHATITQGADTHEYSNSNLNRFNRNAAKNYRYCCSPTRMIHLSTLPQDVTEEEIASLV 378
+SK+ T+T D +YS S+LNRFN N KNYR+CC+PT+MIH+S LPQD+TE+ I SLV
Sbjct: 548 YSKYPTVTADPDARDYSTSHLNRFNSNVVKNYRHCCAPTKMIHISALPQDITEDTIHSLV 607
Query: 377 EEHGTIVNCKVL*DESEETGSGSV*D*GAGY*SPRVQACHPRLSGSVIRISFSQLQNI 204
EHGTI N ++ + + +T + + + V+ +L + IRISFSQ+QNI
Sbjct: 608 GEHGTIANSRLF-ETNGKTQALVLFESVEEATEALVEKHASKLDRTNIRISFSQMQNI 664
>ref|XP_229224.1| similar to Polypyrimidine tract-binding protein 1 (PTB)
(Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
(57 kDa RNA-binding protein PPTB-1) [Rattus norvegicus]
Length = 492
Score = 47.8 bits (112), Expect = 9e-05
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = -1
Query: 521 THEYSNSNLNRFNRNAAKNYRYCCSPTRMIHLSTLPQDVTEEEIASLVEEHGTIV 357
T +Y+NS L+RF + +KN++ P+ +HLS LP V+EEE+ +L +G V
Sbjct: 388 TKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAV 442
>ref|NP_114368.1| polypyrimidine tract-binding protein 1 isoform c; RNA-binding
protein; heterogeneous nuclear ribonucleoprotein
polypeptide I [Homo sapiens]
gi|131528|sp|P26599|PTB_HUMAN Polypyrimidine
tract-binding protein 1 (PTB) (Heterogeneous nuclear
ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding
protein PPTB-1) gi|35768|emb|CAA43973.1| polypirimidine
tract binding protein [Homo sapiens]
gi|35774|emb|CAA43056.1| polypyrimidine tract-binding
protein (pPTB) [Homo sapiens] gi|4096061|gb|AAC99798.1|
PTB_HUMAN; PTB; HETEROGENEOUS NUCLEA; HNRNP I; 57 KD
RNA-BINDING PROTEIN PPTB-1 [Homo sapiens]
gi|13325140|gb|AAH04383.1|AAH04383 Similar to
polypyrimidine tract binding protein (heterogeneous
nuclear ribonucleoprotein I) [Homo sapiens]
Length = 531
Score = 47.0 bits (110), Expect = 2e-04
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = -1
Query: 521 THEYSNSNLNRFNRNAAKNYRYCCSPTRMIHLSTLPQDVTEEEIASLVEEHGTIV 357
T +Y NS L+RF + +KN++ P+ +HLS +P V+EE++ L +G +V
Sbjct: 427 TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 481
Score = 35.0 bits (79), Expect = 0.62
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = -1
Query: 509 SNSNLNRFNRNAAKNY----RYCCSPTRMIHLSTLPQDVTEEEIASLVEEHGTIVNCKVL 342
S+++ + N N +K + R P+R+IH+ LP DVTE E+ SL G + N +L
Sbjct: 32 SSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML 91
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,489,947
Number of Sequences: 1393205
Number of extensions: 9101990
Number of successful extensions: 26187
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 24658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26122
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
