Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008258A_C01 KMC008258A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567984.1| putative protein; protein id: At4g35360.1, supp... 167 9e-41
gb|AAM63225.1| unknown [Arabidopsis thaliana] 167 9e-41
pir||A84551 hypothetical protein At2g17340 [imported] - Arabidop... 163 1e-39
ref|NP_565412.1| expressed protein; protein id: At2g17340.1, sup... 163 1e-39
gb|AAM63619.1| unknown [Arabidopsis thaliana] 162 2e-39
>ref|NP_567984.1| putative protein; protein id: At4g35360.1, supported by cDNA:
206573., supported by cDNA: gi_17063178 [Arabidopsis
thaliana] gi|17063179|gb|AAL32984.1| unknown protein
[Arabidopsis thaliana] gi|23506025|gb|AAN28872.1|
At4g35360/F23E12_80 [Arabidopsis thaliana]
Length = 367
Score = 167 bits (422), Expect = 9e-41
Identities = 81/89 (91%), Positives = 86/89 (96%)
Frame = -2
Query: 520 LVGVSTSNLLIANSGNDLPVIDLTRVSQELAYLASDADLVILEGMGRGIETNLYAQFKCD 341
L+GV TSNLLIANSGNDLPVIDL RVSQE+AYL+SDADLVILEGMGRGIETNLYAQFKCD
Sbjct: 276 LMGVDTSNLLIANSGNDLPVIDLARVSQEVAYLSSDADLVILEGMGRGIETNLYAQFKCD 335
Query: 340 SLKIGMVKHPQVAEFLGGRLYDCVFKYNE 254
SLKIGMVKHP+VA+FLGGRLYDCV KYNE
Sbjct: 336 SLKIGMVKHPEVAQFLGGRLYDCVIKYNE 364
>gb|AAM63225.1| unknown [Arabidopsis thaliana]
Length = 367
Score = 167 bits (422), Expect = 9e-41
Identities = 81/89 (91%), Positives = 86/89 (96%)
Frame = -2
Query: 520 LVGVSTSNLLIANSGNDLPVIDLTRVSQELAYLASDADLVILEGMGRGIETNLYAQFKCD 341
L+GV TSNLLIANSGNDLPVIDL RVSQE+AYL+SDADLVILEGMGRGIETNLYAQFKCD
Sbjct: 276 LMGVDTSNLLIANSGNDLPVIDLARVSQEVAYLSSDADLVILEGMGRGIETNLYAQFKCD 335
Query: 340 SLKIGMVKHPQVAEFLGGRLYDCVFKYNE 254
SLKIGMVKHP+VA+FLGGRLYDCV KYNE
Sbjct: 336 SLKIGMVKHPEVAQFLGGRLYDCVIKYNE 364
>pir||A84551 hypothetical protein At2g17340 [imported] - Arabidopsis thaliana
Length = 357
Score = 163 bits (412), Expect = 1e-39
Identities = 80/89 (89%), Positives = 86/89 (95%)
Frame = -2
Query: 520 LVGVSTSNLLIANSGNDLPVIDLTRVSQELAYLASDADLVILEGMGRGIETNLYAQFKCD 341
L+GV TS LLIANSGNDLPVIDL+RVSQELAYL+SDADLVI+EGMGRGIETNLYAQFKCD
Sbjct: 266 LLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIETNLYAQFKCD 325
Query: 340 SLKIGMVKHPQVAEFLGGRLYDCVFKYNE 254
SLKIGMVKH +VAEFLGGRLYDCVFK+NE
Sbjct: 326 SLKIGMVKHLEVAEFLGGRLYDCVFKFNE 354
>ref|NP_565412.1| expressed protein; protein id: At2g17340.1, supported by cDNA:
2578., supported by cDNA: gi_15293086, supported by
cDNA: gi_20465694 [Arabidopsis thaliana]
gi|15293087|gb|AAK93654.1| unknown protein [Arabidopsis
thaliana] gi|20465695|gb|AAM20316.1| unknown protein
[Arabidopsis thaliana]
Length = 367
Score = 163 bits (412), Expect = 1e-39
Identities = 80/89 (89%), Positives = 86/89 (95%)
Frame = -2
Query: 520 LVGVSTSNLLIANSGNDLPVIDLTRVSQELAYLASDADLVILEGMGRGIETNLYAQFKCD 341
L+GV TS LLIANSGNDLPVIDL+RVSQELAYL+SDADLVI+EGMGRGIETNLYAQFKCD
Sbjct: 276 LLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIETNLYAQFKCD 335
Query: 340 SLKIGMVKHPQVAEFLGGRLYDCVFKYNE 254
SLKIGMVKH +VAEFLGGRLYDCVFK+NE
Sbjct: 336 SLKIGMVKHLEVAEFLGGRLYDCVFKFNE 364
>gb|AAM63619.1| unknown [Arabidopsis thaliana]
Length = 367
Score = 162 bits (410), Expect = 2e-39
Identities = 79/89 (88%), Positives = 86/89 (95%)
Frame = -2
Query: 520 LVGVSTSNLLIANSGNDLPVIDLTRVSQELAYLASDADLVILEGMGRGIETNLYAQFKCD 341
L+GV TS LLIANSGNDLPVI+L+RVSQELAYL+SDADLVI+EGMGRGIETNLYAQFKCD
Sbjct: 276 LLGVDTSKLLIANSGNDLPVIBLSRVSQELAYLSSDADLVIVEGMGRGIETNLYAQFKCD 335
Query: 340 SLKIGMVKHPQVAEFLGGRLYDCVFKYNE 254
SLKIGMVKH +VAEFLGGRLYDCVFK+NE
Sbjct: 336 SLKIGMVKHLEVAEFLGGRLYDCVFKFNE 364
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,342,261
Number of Sequences: 1393205
Number of extensions: 8629286
Number of successful extensions: 15811
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 15542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15809
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
