Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008248A_C01 KMC008248A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB01094.1| gene_id:MOJ10.20~unknown protein [Arabidopsis th... 104 6e-22
ref|NP_189348.1| spastin protein, putative; protein id: At3g2712... 104 6e-22
dbj|BAB14567.1| unnamed protein product [Homo sapiens] 62 3e-09
emb|CAD39050.1| hypothetical protein [Homo sapiens] 62 3e-09
ref|NP_071399.1| fidgetin-like 1 [Homo sapiens] gi|10434929|dbj|... 62 6e-09
>dbj|BAB01094.1| gene_id:MOJ10.20~unknown protein [Arabidopsis thaliana]
Length = 694
Score = 104 bits (260), Expect = 6e-22
Identities = 51/64 (79%), Positives = 57/64 (88%)
Frame = -3
Query: 543 DASMGPLREALKQGIEITNLKKEDMRPVTLQDFENALQEVRPSVSPNELGTYEQWNKPFG 364
DA+MGPLREALK+GI+ITNL K+DMR VTLQDF++ALQEVRPSVS NELG YE WN FG
Sbjct: 631 DATMGPLREALKRGIDITNLTKDDMRLVTLQDFKDALQEVRPSVSQNELGIYENWNNQFG 690
Query: 363 SLSL 352
SLSL
Sbjct: 691 SLSL 694
>ref|NP_189348.1| spastin protein, putative; protein id: At3g27120.1 [Arabidopsis
thaliana]
Length = 327
Score = 104 bits (260), Expect = 6e-22
Identities = 51/64 (79%), Positives = 57/64 (88%)
Frame = -3
Query: 543 DASMGPLREALKQGIEITNLKKEDMRPVTLQDFENALQEVRPSVSPNELGTYEQWNKPFG 364
DA+MGPLREALK+GI+ITNL K+DMR VTLQDF++ALQEVRPSVS NELG YE WN FG
Sbjct: 264 DATMGPLREALKRGIDITNLTKDDMRLVTLQDFKDALQEVRPSVSQNELGIYENWNNQFG 323
Query: 363 SLSL 352
SLSL
Sbjct: 324 SLSL 327
>dbj|BAB14567.1| unnamed protein product [Homo sapiens]
Length = 254
Score = 62.4 bits (150), Expect = 3e-09
Identities = 29/60 (48%), Positives = 39/60 (64%)
Frame = -3
Query: 543 DASMGPLREALKQGIEITNLKKEDMRPVTLQDFENALQEVRPSVSPNELGTYEQWNKPFG 364
+AS+GP+R Q +I + + +RP+ DFENA + VRPSVSP +L YE WNK FG
Sbjct: 194 EASLGPIRSL--QTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 251
>emb|CAD39050.1| hypothetical protein [Homo sapiens]
Length = 563
Score = 62.4 bits (150), Expect = 3e-09
Identities = 29/60 (48%), Positives = 39/60 (64%)
Frame = -3
Query: 543 DASMGPLREALKQGIEITNLKKEDMRPVTLQDFENALQEVRPSVSPNELGTYEQWNKPFG 364
+AS+GP+R Q +I + + +RP+ DFENA + VRPSVSP +L YE WNK FG
Sbjct: 503 EASLGPIRSL--QTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 560
>ref|NP_071399.1| fidgetin-like 1 [Homo sapiens] gi|10434929|dbj|BAB14426.1| unnamed
protein product [Homo sapiens]
Length = 674
Score = 61.6 bits (148), Expect = 6e-09
Identities = 29/59 (49%), Positives = 38/59 (64%)
Frame = -3
Query: 540 ASMGPLREALKQGIEITNLKKEDMRPVTLQDFENALQEVRPSVSPNELGTYEQWNKPFG 364
AS+GP+R Q +I + + +RP+ DFENA + VRPSVSP +L YE WNK FG
Sbjct: 615 ASLGPIRSL--QTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 671
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,900,627
Number of Sequences: 1393205
Number of extensions: 9196903
Number of successful extensions: 20508
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 20059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20500
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
