Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008247A_C01 KMC008247A_c01
(477 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180190.2| unknown protein; protein id: At2g26210.1, suppo... 83 9e-18
dbj|BAC10115.1| contains EST AU056950(S21011)~similar to Arabido... 80 1e-14
ref|ZP_00085100.1| hypothetical protein [Pseudomonas fluorescens... 35 0.32
emb|CAD59239.1| NAD(+) ADP-ribosyltransferase-3 [Dictyostelium d... 35 0.54
gb|AAN63819.1| ankyrin domain protein [Nicotiana tabacum] 35 0.54
>ref|NP_180190.2| unknown protein; protein id: At2g26210.1, supported by cDNA:
gi_17644148, supported by cDNA: gi_20465458 [Arabidopsis
thaliana] gi|17644149|gb|AAL38772.1| unknown protein
[Arabidopsis thaliana] gi|20465459|gb|AAM20189.1|
unknown protein [Arabidopsis thaliana]
Length = 190
Score = 83.2 bits (204), Expect(2) = 9e-18
Identities = 39/53 (73%), Positives = 46/53 (86%)
Frame = -3
Query: 421 VAVCAQAAVFNQTDIVFILMDSGASLKYKNAQGETPLDCAPATLQYKMRKKME 263
++V A +FNQTDI +LMD GASL+YKNAQGETPLDCAPATLQYKMR+KM+
Sbjct: 136 MSVLHLAVLFNQTDIALMLMDHGASLEYKNAQGETPLDCAPATLQYKMREKMK 188
Score = 27.7 bits (60), Expect(2) = 9e-18
Identities = 10/13 (76%), Positives = 13/13 (99%)
Frame = -1
Query: 477 NYRDKQGLSLLHL 439
NYRD+QG+S+LHL
Sbjct: 129 NYRDRQGMSVLHL 141
>dbj|BAC10115.1| contains EST AU056950(S21011)~similar to Arabidopsis thaliana
chromosome 2,full-Length cDNA At2g26210~unknown protein
[Oryza sativa (japonica cultivar-group)]
gi|22831172|dbj|BAC16032.1| contains EST
AU056950(S21011)~similar to Arabidopsis thaliana
chromosome 2,full-Length cDNA At2g26210~unknown protein
[Oryza sativa (japonica cultivar-group)]
Length = 269
Score = 80.1 bits (196), Expect = 1e-14
Identities = 36/50 (72%), Positives = 45/50 (90%)
Frame = -3
Query: 409 AQAAVFNQTDIVFILMDSGASLKYKNAQGETPLDCAPATLQYKMRKKMEE 260
+QAA+FNQT+I ILMD+GA+++ KN QGETPLDCAPA LQYKMR++MEE
Sbjct: 213 SQAALFNQTEIALILMDNGANIQSKNGQGETPLDCAPAMLQYKMRQRMEE 262
>ref|ZP_00085100.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 237
Score = 35.4 bits (80), Expect = 0.32
Identities = 18/34 (52%), Positives = 23/34 (66%)
Frame = -3
Query: 403 AAVFNQTDIVFILMDSGASLKYKNAQGETPLDCA 302
AA+FN+ +IV L+D GA K K+A G T LD A
Sbjct: 187 AAMFNRVEIVDYLIDQGADPKAKDANGITALDAA 220
>emb|CAD59239.1| NAD(+) ADP-ribosyltransferase-3 [Dictyostelium discoideum]
Length = 2536
Score = 34.7 bits (78), Expect = 0.54
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -3
Query: 391 NQTDIVFILMDSGASLKYKNAQGETPLDCAPATLQYKMRKKM 266
N I F+L+DSGA++K N+ +PL A A + + + KK+
Sbjct: 1285 NHFQIAFLLVDSGANVKISNSFERSPLHLACAKMNFPLIKKL 1326
>gb|AAN63819.1| ankyrin domain protein [Nicotiana tabacum]
Length = 350
Score = 34.7 bits (78), Expect = 0.54
Identities = 15/48 (31%), Positives = 31/48 (64%)
Frame = -3
Query: 403 AAVFNQTDIVFILMDSGASLKYKNAQGETPLDCAPATLQYKMRKKMEE 260
AA + + + V +L+++GA++ +N G+TP+D A Q ++ K +E+
Sbjct: 299 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQQEVLKLLEK 346
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,322,162
Number of Sequences: 1393205
Number of extensions: 8499002
Number of successful extensions: 20417
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 19375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20410
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
