Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008244A_C01 KMC008244A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC42087.1| putative NAC domain protein [Solanum tuberosum] 251 3e-66
gb|AAM34766.1|AF509866_1 nam-like protein 3 [Petunia x hybrida] 251 4e-66
ref|NP_680161.1| Expressed protein; protein id: At5g08790.1, sup... 240 9e-63
pir||T52345 OsNAC6 protein [imported] - rice gi|6730942|dbj|BAA8... 239 2e-62
ref|NP_201184.1| putative protein; protein id: At5g63790.1, supp... 237 6e-62
>emb|CAC42087.1| putative NAC domain protein [Solanum tuberosum]
Length = 301
Score = 251 bits (642), Expect = 3e-66
Identities = 118/147 (80%), Positives = 126/147 (85%)
Frame = +3
Query: 93 GKGELELPPGFRFHPTDEELVNHYLCTKGAGQSFNYSVIKEIDLYKFDPWQLPEMGLDGE 272
G +LELP GFRFHPTD+ELV HYLC K AGQ S+I EIDLYKFDPWQLPE L GE
Sbjct: 7 GNQQLELPAGFRFHPTDDELVQHYLCRKCAGQPIAVSIITEIDLYKFDPWQLPEKALYGE 66
Query: 273 KEWYFFSPRDRKYPNGSRPNRAAGSGYGKATGADKAMGKPKGVGIKKALVLYVGKAPKGI 452
KEWYFFSPRDRKYPNGSRPNRAAG+GY KATGADK +GKPK +GIKKALV Y GKAP+GI
Sbjct: 67 KEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGKPKTLGIKKALVFYAGKAPRGI 126
Query: 453 KRNWIMHEYRLANVDRSAGKKSNLRLD 533
K NWIMHEYRLANVDRSAGK +NLRLD
Sbjct: 127 KTNWIMHEYRLANVDRSAGKNNNLRLD 153
>gb|AAM34766.1|AF509866_1 nam-like protein 3 [Petunia x hybrida]
Length = 312
Score = 251 bits (641), Expect = 4e-66
Identities = 118/147 (80%), Positives = 126/147 (85%)
Frame = +3
Query: 93 GKGELELPPGFRFHPTDEELVNHYLCTKGAGQSFNYSVIKEIDLYKFDPWQLPEMGLDGE 272
G +LELP GFRFHPTDEELV HYLC K AGQ S+I EIDLYKFDPWQLPE L GE
Sbjct: 7 GNQQLELPAGFRFHPTDEELVQHYLCQKCAGQPICVSIIAEIDLYKFDPWQLPEKALYGE 66
Query: 273 KEWYFFSPRDRKYPNGSRPNRAAGSGYGKATGADKAMGKPKGVGIKKALVLYVGKAPKGI 452
KEWYFFSPRDRKYPNGSRPNRAAG+GY KATGADK +GKP+ +GIKKALV Y GKAP+GI
Sbjct: 67 KEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGKPRTLGIKKALVFYAGKAPRGI 126
Query: 453 KRNWIMHEYRLANVDRSAGKKSNLRLD 533
K NWIMHEYRLANVDRSAGK +NLRLD
Sbjct: 127 KTNWIMHEYRLANVDRSAGKSNNLRLD 153
>ref|NP_680161.1| Expressed protein; protein id: At5g08790.1, supported by cDNA:
gi_19424090 [Arabidopsis thaliana]
gi|13548337|emb|CAC35884.1| ATAF2 protein [Arabidopsis
thaliana] gi|19424091|gb|AAL87335.1| unknown protein
[Arabidopsis thaliana] gi|22136754|gb|AAM91696.1|
unknown protein [Arabidopsis thaliana]
Length = 283
Score = 240 bits (612), Expect = 9e-63
Identities = 116/148 (78%), Positives = 124/148 (83%), Gaps = 2/148 (1%)
Frame = +3
Query: 96 KGELELPPGFRFHPTDEELVNHYLCTKGAGQSFNYSVIKEIDLYKFDPWQLPEMGLDGEK 275
K EL LP GFRFHPTDEELV YLC K A + + VI EIDLYKF+PW+LPEM L GEK
Sbjct: 2 KSELNLPAGFRFHPTDEELVKFYLCRKCASEQISAPVIAEIDLYKFNPWELPEMSLYGEK 61
Query: 276 EWYFFSPRDRKYPNGSRPNRAAGSGYGKATGADKAMGKPKGVGIKKALVLYVGKAPKGIK 455
EWYFFSPRDRKYPNGSRPNRAAG+GY KATGADK +GKPK +GIKKALV Y GKAPKGIK
Sbjct: 62 EWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKTLGIKKALVFYAGKAPKGIK 121
Query: 456 RNWIMHEYRLANVDRSA--GKKSNLRLD 533
NWIMHEYRLANVDRSA KK+NLRLD
Sbjct: 122 TNWIMHEYRLANVDRSASVNKKNNLRLD 149
>pir||T52345 OsNAC6 protein [imported] - rice gi|6730942|dbj|BAA89800.1| OsNAC6
protein [Oryza sativa] gi|13272281|gb|AAK17067.1| NAC6
[Oryza sativa] gi|20161457|dbj|BAB90381.1| OsNAC6
protein [Oryza sativa (japonica cultivar-group)]
Length = 303
Score = 239 bits (610), Expect = 2e-62
Identities = 114/147 (77%), Positives = 122/147 (82%)
Frame = +3
Query: 93 GKGELELPPGFRFHPTDEELVNHYLCTKGAGQSFNYSVIKEIDLYKFDPWQLPEMGLDGE 272
G +L+LPPGFRFHPTDEELV HYLC + AG +I EIDLYKFDPWQLP M L GE
Sbjct: 3 GGQDLQLPPGFRFHPTDEELVMHYLCRRCAGLPIAVPIIAEIDLYKFDPWQLPRMALYGE 62
Query: 273 KEWYFFSPRDRKYPNGSRPNRAAGSGYGKATGADKAMGKPKGVGIKKALVLYVGKAPKGI 452
KEWYFFSPRDRKYPNGSRPNRAAGSGY KATGADK +G PK V IKKALV Y GKAPKG
Sbjct: 63 KEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGSPKPVAIKKALVFYAGKAPKGE 122
Query: 453 KRNWIMHEYRLANVDRSAGKKSNLRLD 533
K NWIMHEYRLA+VDRSA KK++LRLD
Sbjct: 123 KTNWIMHEYRLADVDRSARKKNSLRLD 149
>ref|NP_201184.1| putative protein; protein id: At5g63790.1, supported by cDNA:
6637., supported by cDNA: gi_15027972 [Arabidopsis
thaliana] gi|10177060|dbj|BAB10472.1| contains
similarity to NAC-domain protein~gene_id:MBK5.27
[Arabidopsis thaliana] gi|21594049|gb|AAM65967.1| ATAF2
protein [Arabidopsis thaliana]
Length = 269
Score = 237 bits (605), Expect = 6e-62
Identities = 115/148 (77%), Positives = 123/148 (82%), Gaps = 2/148 (1%)
Frame = +3
Query: 96 KGELELPPGFRFHPTDEELVNHYLCTKGAGQSFNYSVIKEIDLYKFDPWQLPEMGLDGEK 275
K EL LP GFRFHPTDEELV YLC + A + N VI EIDLYKF+PW+LPEM L GEK
Sbjct: 2 KAELNLPAGFRFHPTDEELVKFYLCRRCASEPINVPVIAEIDLYKFNPWELPEMALYGEK 61
Query: 276 EWYFFSPRDRKYPNGSRPNRAAGSGYGKATGADKAMGKPKGVGIKKALVLYVGKAPKGIK 455
EWYFFS RDRKYPNGSRPNRAAG+GY KATGADK +GKPK +GIKKALV Y GKAPKGIK
Sbjct: 62 EWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKTLGIKKALVFYAGKAPKGIK 121
Query: 456 RNWIMHEYRLANVDRSA--GKKSNLRLD 533
NWIMHEYRLANVDRSA KK+NLRLD
Sbjct: 122 TNWIMHEYRLANVDRSASTNKKNNLRLD 149
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,283,457
Number of Sequences: 1393205
Number of extensions: 14647666
Number of successful extensions: 60002
Number of sequences better than 10.0: 294
Number of HSP's better than 10.0 without gapping: 48264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57626
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
