Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008241A_C01 KMC008241A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188801.1| peptidylprolyl isomerase, putative; protein id:... 127 1e-28
emb|CAC00654.1| FKBP-like [Arabidopsis thaliana] gi|11994400|dbj... 127 1e-28
gb|AAM13008.1| FKBP-type peptidyl-prolyl cis-trans isomerases, p... 127 1e-28
gb|AAH49032.1| Similar to hypothetical protein MGC29649 [Danio r... 49 4e-05
gb|AAK69032.1|AF274877_1 Ah receptor interacting protein [Danio ... 46 3e-04
>ref|NP_188801.1| peptidylprolyl isomerase, putative; protein id: At3g21640.1
[Arabidopsis thaliana]
Length = 356
Score = 127 bits (318), Expect = 1e-28
Identities = 64/104 (61%), Positives = 82/104 (78%), Gaps = 2/104 (1%)
Frame = -2
Query: 583 KALFRRGKARAALGQTDAAREDYLKARKYAPEDKAIARELRLLAEHDKAVYQKQKEIYKG 404
KALFRRGKA+A LGQ D+AR+D+ KA+KYAP+DKAI RELR LAE +KA+YQKQKE+YKG
Sbjct: 256 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG 315
Query: 403 IFGPRPQPVPKRKN--WLILIWQWFLSLFYGLITLFQRERYKSD 278
IF + + K K+ WLI++WQWF+SLF +F+R R K+D
Sbjct: 316 IFKGKDEGGAKSKSLFWLIVLWQWFVSLF---SRIFRRHRVKAD 356
>emb|CAC00654.1| FKBP-like [Arabidopsis thaliana] gi|11994400|dbj|BAB02359.1|
gene_id:MIL23.21~pir||S72485~similar to unknown protein
[Arabidopsis thaliana]
Length = 365
Score = 127 bits (318), Expect = 1e-28
Identities = 64/104 (61%), Positives = 82/104 (78%), Gaps = 2/104 (1%)
Frame = -2
Query: 583 KALFRRGKARAALGQTDAAREDYLKARKYAPEDKAIARELRLLAEHDKAVYQKQKEIYKG 404
KALFRRGKA+A LGQ D+AR+D+ KA+KYAP+DKAI RELR LAE +KA+YQKQKE+YKG
Sbjct: 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG 324
Query: 403 IFGPRPQPVPKRKN--WLILIWQWFLSLFYGLITLFQRERYKSD 278
IF + + K K+ WLI++WQWF+SLF +F+R R K+D
Sbjct: 325 IFKGKDEGGAKSKSLFWLIVLWQWFVSLF---SRIFRRHRVKAD 365
>gb|AAM13008.1| FKBP-type peptidyl-prolyl cis-trans isomerases, putative
[Arabidopsis thaliana] gi|24899729|gb|AAN65079.1|
FKBP-type peptidyl-prolyl cis-trans isomerases, putative
[Arabidopsis thaliana]
Length = 365
Score = 127 bits (318), Expect = 1e-28
Identities = 64/104 (61%), Positives = 82/104 (78%), Gaps = 2/104 (1%)
Frame = -2
Query: 583 KALFRRGKARAALGQTDAAREDYLKARKYAPEDKAIARELRLLAEHDKAVYQKQKEIYKG 404
KALFRRGKA+A LGQ D+AR+D+ KA+KYAP+DKAI RELR LAE +KA+YQKQKE+YKG
Sbjct: 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG 324
Query: 403 IFGPRPQPVPKRKN--WLILIWQWFLSLFYGLITLFQRERYKSD 278
IF + + K K+ WLI++WQWF+SLF +F+R R K+D
Sbjct: 325 IFKGKDEGGAKSKSLFWLIVLWQWFVSLF---SRIFRRHRVKAD 365
>gb|AAH49032.1| Similar to hypothetical protein MGC29649 [Danio rerio]
Length = 217
Score = 49.3 bits (116), Expect = 4e-05
Identities = 25/67 (37%), Positives = 38/67 (56%)
Frame = -2
Query: 583 KALFRRGKARAALGQTDAAREDYLKARKYAPEDKAIARELRLLAEHDKAVYQKQKEIYKG 404
KAL+R G A LG AAR+ +A + P D + ++L+ + E YQK+K +YKG
Sbjct: 137 KALYRAGVASLELGDAPAARQYLTQASRGKPNDADVKKQLQRVEERLSQDYQKEKALYKG 196
Query: 403 IFGPRPQ 383
+F + Q
Sbjct: 197 MFSKQKQ 203
>gb|AAK69032.1|AF274877_1 Ah receptor interacting protein [Danio rerio]
Length = 342
Score = 46.2 bits (108), Expect = 3e-04
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = -2
Query: 586 VKALFRRGKARAALGQTDAAREDYLKARKYAPE-DKAIARELRLLAEHDKAVYQKQKEIY 410
VKA F+RGKA AA+ AR D+ K P + +IA+ELR + E + +++K Y
Sbjct: 266 VKAYFKRGKAHAAVWNEAEARADFAKVLTLDPSLEASIAKELRAMEERIREKEKEEKGRY 325
Query: 409 KGIFG 395
K +FG
Sbjct: 326 KNLFG 330
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,135,371
Number of Sequences: 1393205
Number of extensions: 9530117
Number of successful extensions: 21258
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 20737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21244
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
