Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008070A_C01 KMC008070A_c01
(422 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05363 phosphogluconate dehydrogenase (decarboxylating) (EC... 116 7e-26
pir||S57786 phosphogluconate dehydrogenase (decarboxylating) (EC... 104 2e-22
ref|NP_186885.1| 6-phosphogluconate dehydrogenase, putative; pro... 99 2e-20
gb|AAC79956.1| 6-phosphogluconate dehydrogenase [Zea mays] 94 4e-19
dbj|BAA93024.1| ESTs D24970(R2869),AU031961(R2869) correspond to... 94 5e-19
>pir||T05363 phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44) -
soybean gi|2529229|dbj|BAA22812.1| 6-phosphogluconate
dehydrogenase [Glycine max]
Length = 511
Score = 116 bits (290), Expect = 7e-26
Identities = 55/71 (77%), Positives = 60/71 (84%), Gaps = 1/71 (1%)
Frame = -3
Query: 420 LAYFDTYRRESLPANLVQAQRDYFGAHTYERVDMEGSYHTEWFKLAKQS-RI*ITVFEPI 244
LAYFDTYRRE LPANLVQAQRDYFGAHTYERVD+EGSYHTEWFKLAKQS ++ +
Sbjct: 436 LAYFDTYRRERLPANLVQAQRDYFGAHTYERVDIEGSYHTEWFKLAKQSKKLDYCISANQ 495
Query: 243 TIPNKCNVFCS 211
PNKCN+FCS
Sbjct: 496 DFPNKCNIFCS 506
>pir||S57786 phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44) -
alfalfa gi|603221|gb|AAB41553.1| 6-phosphogluconate
dehydrogenase
Length = 486
Score = 104 bits (260), Expect = 2e-22
Identities = 48/51 (94%), Positives = 50/51 (97%)
Frame = -3
Query: 420 LAYFDTYRRESLPANLVQAQRDYFGAHTYERVDMEGSYHTEWFKLAKQSRI 268
LAYFD+YRRE LPANLVQAQRDYFGAHTYERVD+EGSYHTEWFKLAKQSRI
Sbjct: 436 LAYFDSYRRERLPANLVQAQRDYFGAHTYERVDIEGSYHTEWFKLAKQSRI 486
>ref|NP_186885.1| 6-phosphogluconate dehydrogenase, putative; protein id:
At3g02360.1, supported by cDNA: 34412., supported by
cDNA: gi_15983433 [Arabidopsis thaliana]
gi|10092176|gb|AAG12595.1|AC068900_1 6-phosphogluconate
dehydrogenase, putative; 13029-14489 [Arabidopsis
thaliana] gi|15983434|gb|AAL11585.1|AF424591_1
AT3g02360/F11A12_104 [Arabidopsis thaliana]
gi|21592941|gb|AAM64891.1| 6-phosphogluconate
dehydrogenase, putative [Arabidopsis thaliana]
gi|25141203|gb|AAN73296.1| At3g02360/F11A12_104
[Arabidopsis thaliana]
Length = 486
Score = 98.6 bits (244), Expect = 2e-20
Identities = 43/51 (84%), Positives = 49/51 (95%)
Frame = -3
Query: 420 LAYFDTYRRESLPANLVQAQRDYFGAHTYERVDMEGSYHTEWFKLAKQSRI 268
LAYFD+YRRE LPANLVQAQRDYFGAHTYER D+EGS+HTEWFK+A+QS+I
Sbjct: 436 LAYFDSYRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKIARQSKI 486
>gb|AAC79956.1| 6-phosphogluconate dehydrogenase [Zea mays]
Length = 80
Score = 94.0 bits (232), Expect = 4e-19
Identities = 41/51 (80%), Positives = 47/51 (91%)
Frame = -3
Query: 420 LAYFDTYRRESLPANLVQAQRDYFGAHTYERVDMEGSYHTEWFKLAKQSRI 268
LAYFD+YR + LPANLVQAQRDYFGAHTYERVDM GS+HTEWFK+A+ S+I
Sbjct: 30 LAYFDSYRXDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKIARNSKI 80
>dbj|BAA93024.1| ESTs D24970(R2869),AU031961(R2869) correspond to a region of the
predicted gene.~Similar to Zea mays putative cytosolic
6-phosphogluconate dehydrogenase (AF061838) [Oryza
sativa (japonica cultivar-group)]
gi|19569141|gb|AAL92029.1|AF486280_1 cytosolic
6-phosphogluconate dehydrogenase [Oryza sativa]
Length = 480
Score = 93.6 bits (231), Expect = 5e-19
Identities = 40/51 (78%), Positives = 48/51 (93%)
Frame = -3
Query: 420 LAYFDTYRRESLPANLVQAQRDYFGAHTYERVDMEGSYHTEWFKLAKQSRI 268
LAYFD+YRR+ LPANLVQAQRDYFGAHTYERVDM GS+HTEWFK+A+ +++
Sbjct: 430 LAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKIARAAKM 480
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 332,716,416
Number of Sequences: 1393205
Number of extensions: 6544616
Number of successful extensions: 16090
Number of sequences better than 10.0: 311
Number of HSP's better than 10.0 without gapping: 15850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16079
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
