Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008028A_C01 KMC008028A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201421.1| putative protein; protein id: At5g66200.1 [Arab... 171 9e-42
ref|NP_195220.1| putative protein; protein id: At4g34940.1 [Arab... 170 1e-41
gb|AAK91880.1|AC091665_6 Unknown protein [Oryza sativa] 158 6e-38
ref|NP_195327.1| putative protein; protein id: At4g36030.1 [Arab... 156 2e-37
ref|NP_189292.1| unknown protein; protein id: At3g26600.1 [Arabi... 72 7e-12
>ref|NP_201421.1| putative protein; protein id: At5g66200.1 [Arabidopsis thaliana]
gi|10177135|dbj|BAB10425.1|
gene_id:K2A18.28~pir||T10240~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|22531060|gb|AAM97034.1| putative protein [Arabidopsis
thaliana] gi|23198098|gb|AAN15576.1| putative protein
[Arabidopsis thaliana]
Length = 651
Score = 171 bits (432), Expect = 9e-42
Identities = 88/127 (69%), Positives = 103/127 (80%)
Frame = -2
Query: 599 IIGPLLRLLDEREPELTREATISLMKFACTENYLHIDHSKAIITAGGAKHLVQLVYLGEH 420
+IGPL++LLDEREPE+T EA +L KFACT NYLH DHS+ II AGG KHLVQL Y GE
Sbjct: 520 MIGPLVKLLDEREPEVTGEAAAALTKFACTANYLHKDHSRGIIEAGGGKHLVQLAYFGEG 579
Query: 419 TVQVPALFLLSYIALHVADSEELARAEVLAVLEWASKRPNMTQDETLEALLHESKSRLEL 240
VQ+PAL LL YIAL+V DSE+LA+ EVLAVLEWASK+ +TQ E+LEALL E+K L+L
Sbjct: 580 GVQIPALELLCYIALNVPDSEQLAKDEVLAVLEWASKQSWVTQLESLEALLQEAKRGLDL 639
Query: 239 YQSRGSR 219
YQ RGSR
Sbjct: 640 YQQRGSR 646
>ref|NP_195220.1| putative protein; protein id: At4g34940.1 [Arabidopsis thaliana]
gi|7486861|pir||T10240 hypothetical protein T11I11.180 -
Arabidopsis thaliana gi|5123711|emb|CAB45455.1| putative
protein [Arabidopsis thaliana]
gi|7270445|emb|CAB80211.1| putative protein [Arabidopsis
thaliana]
Length = 664
Score = 170 bits (431), Expect = 1e-41
Identities = 84/129 (65%), Positives = 106/129 (82%)
Frame = -2
Query: 599 IIGPLLRLLDEREPELTREATISLMKFACTENYLHIDHSKAIITAGGAKHLVQLVYLGEH 420
IIGPL++LLDERE E+ EA ++L+KF+CTEN+L +HSKAII AGGAKHL+QLVY GE
Sbjct: 535 IIGPLVKLLDEREAEIAMEAAVALIKFSCTENFLRDNHSKAIIAAGGAKHLIQLVYFGEQ 594
Query: 419 TVQVPALFLLSYIALHVADSEELARAEVLAVLEWASKRPNMTQDETLEALLHESKSRLEL 240
VQVPAL LL YIAL+V DSE LA+ EVL VLEW++K+ ++ + T++ +L E+KSRLEL
Sbjct: 595 MVQVPALMLLCYIALNVPDSETLAQEEVLVVLEWSTKQAHLVEAPTIDEILPEAKSRLEL 654
Query: 239 YQSRGSRMF 213
YQSRGSR F
Sbjct: 655 YQSRGSRGF 663
>gb|AAK91880.1|AC091665_6 Unknown protein [Oryza sativa]
Length = 666
Score = 158 bits (399), Expect = 6e-38
Identities = 79/127 (62%), Positives = 103/127 (80%)
Frame = -2
Query: 599 IIGPLLRLLDEREPELTREATISLMKFACTENYLHIDHSKAIITAGGAKHLVQLVYLGEH 420
+I PL+ LLDEREP + +EA ++L KFAC EN+LH++H KAI+ +GGA+HLVQLVYLG+
Sbjct: 535 VIAPLVELLDEREPPVIKEAVLALTKFACNENHLHVNHCKAIVDSGGARHLVQLVYLGDE 594
Query: 419 TVQVPALFLLSYIALHVADSEELARAEVLAVLEWASKRPNMTQDETLEALLHESKSRLEL 240
VQ+ AL LL +IALHV +SEELA+A VLAVL WASK+ +M QD ++ALL ++K RLEL
Sbjct: 595 -VQIEALILLCFIALHVPESEELAQAGVLAVLLWASKQAHMIQDMRVDALLPDAKGRLEL 653
Query: 239 YQSRGSR 219
+QSR SR
Sbjct: 654 FQSRASR 660
>ref|NP_195327.1| putative protein; protein id: At4g36030.1 [Arabidopsis thaliana]
gi|7487180|pir||T05495 hypothetical protein T19K4.160 -
Arabidopsis thaliana gi|3036807|emb|CAA18497.1| putative
protein [Arabidopsis thaliana]
gi|7270555|emb|CAB81512.1| putative protein [Arabidopsis
thaliana] gi|26449953|dbj|BAC42097.1| unknown protein
[Arabidopsis thaliana] gi|28827220|gb|AAO50454.1|
unknown protein [Arabidopsis thaliana]
Length = 670
Score = 156 bits (394), Expect = 2e-37
Identities = 77/129 (59%), Positives = 103/129 (79%)
Frame = -2
Query: 599 IIGPLLRLLDEREPELTREATISLMKFACTENYLHIDHSKAIITAGGAKHLVQLVYLGEH 420
+I PL++LLD+ EP+L E I+L KFA +N+L +HS+ II AGG+K LVQL Y GE+
Sbjct: 540 MIVPLVKLLDDGEPDLAAEVAIALAKFATEDNFLGKEHSRTIIEAGGSKLLVQLAYFGEN 599
Query: 419 TVQVPALFLLSYIALHVADSEELARAEVLAVLEWASKRPNMTQDETLEALLHESKSRLEL 240
Q+PA+ LLSY+A++V DSE+LA+ EVL VLEW+SK+ N+ +DE +EALL+E+KSRLEL
Sbjct: 600 GAQIPAMVLLSYVAMNVPDSEQLAKDEVLTVLEWSSKQANVLEDEDMEALLYEAKSRLEL 659
Query: 239 YQSRGSRMF 213
YQSRGSR F
Sbjct: 660 YQSRGSRGF 668
>ref|NP_189292.1| unknown protein; protein id: At3g26600.1 [Arabidopsis thaliana]
gi|1402879|emb|CAA66810.1| unknown [Arabidopsis
thaliana] gi|1495247|emb|CAA66220.1| orf 05 [Arabidopsis
thaliana] gi|9293939|dbj|BAB01842.1|
emb|CAA66810.1~gene_id:MFE16.13~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 615
Score = 71.6 bits (174), Expect = 7e-12
Identities = 43/123 (34%), Positives = 71/123 (56%)
Frame = -2
Query: 599 IIGPLLRLLDEREPELTREATISLMKFACTENYLHIDHSKAIITAGGAKHLVQLVYLGEH 420
+I PL+ L E+ A ISL KF C EN+L +HSK II G L++L+ E
Sbjct: 482 MIKPLVEKLGSSNQEVAITAVISLQKFVCPENFLCAEHSKNIIEYGAIPLLMKLIRNVEQ 541
Query: 419 TVQVPALFLLSYIALHVADSEELARAEVLAVLEWASKRPNMTQDETLEALLHESKSRLEL 240
+Q+ L LL Y++++ ++ ++L +A+VL VLE A + + Q+ L L+ ++ +L L
Sbjct: 542 QMQLQCLALLCYLSVNASNHQQLEQAKVLTVLEGAERLAGL-QNMELRELVSKAIYQLSL 600
Query: 239 YQS 231
Y +
Sbjct: 601 YNA 603
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,765,299
Number of Sequences: 1393205
Number of extensions: 11103279
Number of successful extensions: 32486
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 31105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32410
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
