Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007950A_C01 KMC007950A_c01
(480 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200601.2| putative protein; protein id: At5g57930.1, supp... 61 7e-09
dbj|BAB08863.1| gb|AAD38255.1~gene_id:MTI20.19~similar to unknow... 61 7e-09
dbj|BAC15509.1| hypothetical protein~similar to Arabidopsis thal... 59 4e-08
ref|NP_568945.1| putative protein; protein id: At5g61930.1, supp... 57 1e-07
dbj|BAB08879.1| gb|AAD38255.1~gene_id:K22G18.5~similar to unknow... 57 1e-07
>ref|NP_200601.2| putative protein; protein id: At5g57930.1, supported by cDNA:
gi_17065249 [Arabidopsis thaliana]
gi|17065250|gb|AAL32779.1| Unknown protein [Arabidopsis
thaliana] gi|21387175|gb|AAM47991.1| unknown protein
[Arabidopsis thaliana]
Length = 440
Score = 60.8 bits (146), Expect = 7e-09
Identities = 30/60 (50%), Positives = 43/60 (71%)
Frame = -1
Query: 480 DLVPPLYVYHLGDQQSG*PLVHELKRYYGILPAVVELFAQAGATVEKNYAHSMREDVVVP 301
DL+PP YV+H+ D +G P+ EL+ +YG PAVVE+ AQAGA V ++Y +MR +V +P
Sbjct: 372 DLIPPRYVWHVPDV-NGPPMQRELRSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGIP 430
Score = 30.8 bits (68), Expect = 8.0
Identities = 19/58 (32%), Positives = 31/58 (52%)
Frame = -1
Query: 480 DLVPPLYVYHLGDQQSG*PLVHELKRYYGILPAVVELFAQAGATVEKNYAHSMREDVV 307
D++ PL YHL D+ G + H+ + +PAVVEL Q G + + A R+ ++
Sbjct: 202 DVIVPLEAYHLFDRL-GKRIRHDERFSIPRVPAVVELCIQGGVEIPEFPAKRRRKPII 258
>dbj|BAB08863.1| gb|AAD38255.1~gene_id:MTI20.19~similar to unknown protein
[Arabidopsis thaliana]
Length = 405
Score = 60.8 bits (146), Expect = 7e-09
Identities = 30/60 (50%), Positives = 43/60 (71%)
Frame = -1
Query: 480 DLVPPLYVYHLGDQQSG*PLVHELKRYYGILPAVVELFAQAGATVEKNYAHSMREDVVVP 301
DL+PP YV+H+ D +G P+ EL+ +YG PAVVE+ AQAGA V ++Y +MR +V +P
Sbjct: 337 DLIPPRYVWHVPDV-NGPPMQRELRSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGIP 395
Score = 30.8 bits (68), Expect = 8.0
Identities = 19/58 (32%), Positives = 31/58 (52%)
Frame = -1
Query: 480 DLVPPLYVYHLGDQQSG*PLVHELKRYYGILPAVVELFAQAGATVEKNYAHSMREDVV 307
D++ PL YHL D+ G + H+ + +PAVVEL Q G + + A R+ ++
Sbjct: 167 DVIVPLEAYHLFDRL-GKRIRHDERFSIPRVPAVVELCIQGGVEIPEFPAKRRRKPII 223
>dbj|BAC15509.1| hypothetical protein~similar to Arabidopsis thaliana chromosome
5K22G18.5 [Oryza sativa (japonica cultivar-group)]
Length = 517
Score = 58.5 bits (140), Expect = 4e-08
Identities = 34/65 (52%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Frame = -1
Query: 480 DLVPPLYVYHL-----GDQQSG*PLVHELKRYYGILPAVVELFAQAGATVEKNYAHSMRE 316
DLV P YV+H+ G PL +ELKRYYG PAVVEL +AGA V Y MR
Sbjct: 444 DLVRPNYVWHVPATGHGGDGGAPPLANELKRYYGKAPAVVELCVRAGAPVPAQYRSMMRL 503
Query: 315 DVVVP 301
DVV P
Sbjct: 504 DVVPP 508
Score = 31.6 bits (70), Expect = 4.7
Identities = 19/47 (40%), Positives = 26/47 (54%)
Frame = -1
Query: 480 DLVPPLYVYHLGDQQSG*PLVHELKRYYGILPAVVELFAQAGATVEK 340
D+V Y YHL D+ + H+ K LPA++EL QAG VE+
Sbjct: 275 DVVGFPYCYHLFDRVGKPRVSHKEKYDVPRLPAILELCIQAGVDVER 321
>ref|NP_568945.1| putative protein; protein id: At5g61930.1, supported by cDNA:
gi_13899116 [Arabidopsis thaliana]
gi|13899117|gb|AAK48980.1|AF370553_1 Unknown protein
[Arabidopsis thaliana] gi|25083634|gb|AAN72097.1|
Unknown protein [Arabidopsis thaliana]
Length = 340
Score = 57.0 bits (136), Expect = 1e-07
Identities = 29/60 (48%), Positives = 36/60 (59%)
Frame = -1
Query: 480 DLVPPLYVYHLGDQQSG*PLVHELKRYYGILPAVVELFAQAGATVEKNYAHSMREDVVVP 301
D+V P YV+H+ D G L + LKR+YG PAV+E+ Q GA V Y MR DVV P
Sbjct: 272 DVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYP 331
>dbj|BAB08879.1| gb|AAD38255.1~gene_id:K22G18.5~similar to unknown protein
[Arabidopsis thaliana]
Length = 402
Score = 57.0 bits (136), Expect = 1e-07
Identities = 29/60 (48%), Positives = 36/60 (59%)
Frame = -1
Query: 480 DLVPPLYVYHLGDQQSG*PLVHELKRYYGILPAVVELFAQAGATVEKNYAHSMREDVVVP 301
D+V P YV+H+ D G L + LKR+YG PAV+E+ Q GA V Y MR DVV P
Sbjct: 334 DVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYP 393
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,112,437
Number of Sequences: 1393205
Number of extensions: 8582799
Number of successful extensions: 16454
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 16053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16425
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
