>KMC007937A_C01 KMC007937A_c01
ACTAATAAGCAAATATAATCATCACGTATGTGGAAAGGGCACGGTCTTCATATGTTCATC
TCACTACGGATGGCATCAAACACATAGTGGAGAAGTGTGAGGTTGGCTATGTAAATAGAA
TCATCATACACCTAAGTTAATACTAGATTAGAGGTGCTCGATACCGTTGAGATGAAAACT
TCTCAGACAACTTAGGTTAGGAGCTTCCACATGAAGAACACGTGATTGAGTTAAGGCATT
GCATTTTCTTCTCTGAAACTGATTATGCCATTCTTTTAAGCTAAGGCGATTTATGGAATG
GAGCCCAGGGTACATGATTGAATAAGATTCAAAGTAACATGTAGAAATGATGAAGTACCA
AAATCACCCTCCTTAGAGAACAGAGGAAGCTTGTAACTTACACCTCCAGACCACCATCTT
CATCTTCATGCAGTGGAGATTCTGATGTAGGAGAGGTCGGGGAATGGGTGACATATTCCC
T

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC007937A_C01 KMC007937A_c01
         (481 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_196175.1| E3 ubiquitin ligase APC1, putative; protein id:...    32  3.6

>ref|NP_196175.1| E3 ubiquitin ligase APC1, putative; protein id: At5g05560.1
           [Arabidopsis thaliana] gi|10178133|dbj|BAB11545.1|
           meiotic check point regulator-like protein [Arabidopsis
           thaliana]
          Length = 1678

 Score = 32.0 bits (71), Expect = 3.6
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -2

Query: 360 WYFIISTCYFESYSIMYPGLHSINRLSLKEWHNQFQRRKCNALTQSRVLHVEAPNLSCLR 181
           W F++ + + ++YS  + G+ SINRL L E    F  + C+  T      +   +L CL 
Sbjct: 529 WEFLLISKFHKTYSRFHNGITSINRLDL-EGIVPFDSKICSEETLGSSCELMVQSLDCLH 587

Query: 180 SFH 172
           + +
Sbjct: 588 AVY 590

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,045,976
Number of Sequences: 1393205
Number of extensions: 7839224
Number of successful extensions: 15166
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15159
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 GNLf015f07 BP075696 1 427 2 SPDL031e09_f BP053943 1 481

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