Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007928A_C01 KMC007928A_c01
(477 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09026 hypothetical protein T27E11.110 - Arabidopsis thalia... 58 6e-08
ref|NP_567789.1| putative protein; protein id: At4g27870.1, supp... 58 6e-08
gb|AAL08260.1| AT4g27870/T27E11_110 [Arabidopsis thaliana] 58 6e-08
gb|AAM19770.1| AT4g27870/T27E11_110 [Arabidopsis thaliana] gi|27... 58 6e-08
dbj|BAB10395.1| gene_id:MOP9.11~pir||T09026~similar to unknown p... 52 3e-06
>pir||T09026 hypothetical protein T27E11.110 - Arabidopsis thaliana
gi|4972118|emb|CAB43975.1| putative protein [Arabidopsis
thaliana] gi|7269640|emb|CAB81436.1| putative protein
[Arabidopsis thaliana]
Length = 770
Score = 57.8 bits (138), Expect = 6e-08
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = -1
Query: 477 SVVCIILLAIAQVYTRKPPKYYFKTMLYYVALALGASGISYIAGILIKELLEK 319
S+ CI+LLAIA+ + R P Y K++LYY ++A+ SGISY+ G +++LLEK
Sbjct: 686 SLFCIVLLAIAKAHVRYPRGSYLKSILYYGSIAVSVSGISYVVGNFLEQLLEK 738
>ref|NP_567789.1| putative protein; protein id: At4g27870.1, supported by cDNA:
gi_15912252 [Arabidopsis thaliana]
Length = 396
Score = 57.8 bits (138), Expect = 6e-08
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = -1
Query: 477 SVVCIILLAIAQVYTRKPPKYYFKTMLYYVALALGASGISYIAGILIKELLEK 319
S+ CI+LLAIA+ + R P Y K++LYY ++A+ SGISY+ G +++LLEK
Sbjct: 312 SLFCIVLLAIAKAHVRYPRGSYLKSILYYGSIAVSVSGISYVVGNFLEQLLEK 364
>gb|AAL08260.1| AT4g27870/T27E11_110 [Arabidopsis thaliana]
Length = 350
Score = 57.8 bits (138), Expect = 6e-08
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = -1
Query: 477 SVVCIILLAIAQVYTRKPPKYYFKTMLYYVALALGASGISYIAGILIKELLEK 319
S+ CI+LLAIA+ + R P Y K++LYY ++A+ SGISY+ G +++LLEK
Sbjct: 266 SLFCIVLLAIAKAHVRYPRGSYLKSILYYGSIAVSVSGISYVVGNFLEQLLEK 318
>gb|AAM19770.1| AT4g27870/T27E11_110 [Arabidopsis thaliana]
gi|27363246|gb|AAO11542.1| At4g27870/T27E11_110
[Arabidopsis thaliana]
Length = 761
Score = 57.8 bits (138), Expect = 6e-08
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = -1
Query: 477 SVVCIILLAIAQVYTRKPPKYYFKTMLYYVALALGASGISYIAGILIKELLEK 319
S+ CI+LLAIA+ + R P Y K++LYY ++A+ SGISY+ G +++LLEK
Sbjct: 677 SLFCIVLLAIAKAHVRYPRGSYLKSILYYGSIAVSVSGISYVVGNFLEQLLEK 729
>dbj|BAB10395.1| gene_id:MOP9.11~pir||T09026~similar to unknown protein [Arabidopsis
thaliana]
Length = 534
Score = 52.0 bits (123), Expect = 3e-06
Identities = 25/61 (40%), Positives = 38/61 (61%), Gaps = 6/61 (9%)
Frame = -1
Query: 477 SVVCIILLAIAQVYTRKPP------KYYFKTMLYYVALALGASGISYIAGILIKELLEKI 316
S+VC+ILL +VY RKP K Y K+ YY ++ + + GISY+ G ++ E +EK+
Sbjct: 448 SLVCVILLGSIKVYVRKPTNSCGSTKAYLKSAAYYTSIVVASCGISYVVGDIMGEYIEKL 507
Query: 315 S 313
S
Sbjct: 508 S 508
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,735,317
Number of Sequences: 1393205
Number of extensions: 8198441
Number of successful extensions: 20762
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 20332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20753
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
