Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007872A_C01 KMC007872A_c01
(638 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191955.1| hypothetical protein; protein id: At4g00450.1 [... 53 3e-06
dbj|BAC20040.1| hypothetical protein~similar to Oryza sativa chr... 52 5e-06
gb|AAK43491.1|AC020666_1 hypothetical protein [Oryza sativa (jap... 47 2e-04
dbj|BAC35124.1| unnamed protein product [Mus musculus] 34 1.9
ref|XP_146503.2| similar to zinc finger protein 347; zinc finger... 34 1.9
>ref|NP_191955.1| hypothetical protein; protein id: At4g00450.1 [Arabidopsis thaliana]
gi|7452419|pir||T01526 hypothetical protein A_IG005I10.24
- Arabidopsis thaliana gi|2252843|gb|AAB62842.1|
A_IG005I10.24 gene product [Arabidopsis thaliana]
gi|6049885|gb|AAF02800.1|AF195115_20 F5I10.24 gene
product [Arabidopsis thaliana] gi|7267384|emb|CAB80854.1|
hypothetical protein [Arabidopsis thaliana]
Length = 2124
Score = 53.1 bits (126), Expect = 3e-06
Identities = 23/29 (79%), Positives = 27/29 (92%)
Frame = -2
Query: 631 NIRAASWLKGAVRVRRTDLTYVGAMDEDS 545
N+RA WLKGAVRVRRTDLTYVG++D+DS
Sbjct: 2096 NLRATCWLKGAVRVRRTDLTYVGSVDDDS 2124
>dbj|BAC20040.1| hypothetical protein~similar to Oryza sativa chromosome10,
OSJNBa0082M15.26 [Oryza sativa (japonica cultivar-group)]
Length = 2192
Score = 52.4 bits (124), Expect = 5e-06
Identities = 21/29 (72%), Positives = 28/29 (96%)
Frame = -2
Query: 631 NIRAASWLKGAVRVRRTDLTYVGAMDEDS 545
N++A SWLKGAVRVRRT+LTY+G++D+DS
Sbjct: 2164 NLKACSWLKGAVRVRRTELTYIGSLDDDS 2192
>gb|AAK43491.1|AC020666_1 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 2073
Score = 47.4 bits (111), Expect = 2e-04
Identities = 20/29 (68%), Positives = 27/29 (92%)
Frame = -2
Query: 631 NIRAASWLKGAVRVRRTDLTYVGAMDEDS 545
N++A S+LK +VRVRRTDLTY+G++DEDS
Sbjct: 2045 NLKACSFLKDSVRVRRTDLTYIGSLDEDS 2073
>dbj|BAC35124.1| unnamed protein product [Mus musculus]
Length = 329
Score = 33.9 bits (76), Expect = 1.9
Identities = 23/77 (29%), Positives = 35/77 (44%)
Frame = +2
Query: 368 SKHLSLHLILNLMSPQQKVKHKMAPSWQSCTRNT*WNNKYTGRGVRNCILQTNQKSCQST 547
S+HLSLH +L ++K K + P C N N T V+ ++ T+ + S
Sbjct: 79 SRHLSLHTVLVSPPEERKYKCHLCPYAAKCRANL--NQHLTVHSVK--LVSTDTEDIVSA 134
Query: 548 ILVHGTDICKVGSSHPY 598
+ G+D G HPY
Sbjct: 135 VTSEGSD----GKKHPY 147
>ref|XP_146503.2| similar to zinc finger protein 347; zinc finger 1111 [Homo sapiens]
[Mus musculus]
Length = 601
Score = 33.9 bits (76), Expect = 1.9
Identities = 23/77 (29%), Positives = 35/77 (44%)
Frame = +2
Query: 368 SKHLSLHLILNLMSPQQKVKHKMAPSWQSCTRNT*WNNKYTGRGVRNCILQTNQKSCQST 547
S+HLSLH +L ++K K + P C N N T V+ ++ T+ + S
Sbjct: 79 SRHLSLHTVLVSPPEERKYKCHLCPYAAKCRANL--NQHLTVHSVK--LVSTDTEDIVSA 134
Query: 548 ILVHGTDICKVGSSHPY 598
+ G+D G HPY
Sbjct: 135 VTSEGSD----GKKHPY 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,389,839
Number of Sequences: 1393205
Number of extensions: 11833123
Number of successful extensions: 29186
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 28246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29170
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
