Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007827A_C01 KMC007827A_c01
(722 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193673.1| putative protein; protein id: At4g19380.1 [Arab... 128 9e-39
gb|AAK64154.1| unknown protein [Arabidopsis thaliana] 96 2e-22
ref|NP_194586.1| putative protein; protein id: At4g28570.1, supp... 96 2e-22
gb|AAM63097.1| unknown [Arabidopsis thaliana] 96 3e-22
gb|AAL31024.1|AC078948_8 putative alcohol oxidase [Oryza sativa] 98 5e-22
>ref|NP_193673.1| putative protein; protein id: At4g19380.1 [Arabidopsis thaliana]
gi|7487715|pir||T05821 hypothetical protein T5K18.160 -
Arabidopsis thaliana gi|3080368|emb|CAA18625.1| putative
protein [Arabidopsis thaliana]
gi|7268733|emb|CAB78940.1| putative protein [Arabidopsis
thaliana]
Length = 678
Score = 128 bits (321), Expect(2) = 9e-39
Identities = 66/93 (70%), Positives = 73/93 (77%)
Frame = +2
Query: 443 NISSPSLLIQCDAVGGGSGSGGGLIAGILAKAGYKVLVKEKGGYTARNNLSLLEAPSMDQ 622
+IS P + IQCDAV GSGSGGG+ AG+LAKAGYKVLV E G Y AR+ LSLLE +MD
Sbjct: 166 SISDPVMKIQCDAVVVGSGSGGGVAAGVLAKAGYKVLVIESGNYYARSKLSLLEGQAMDD 225
Query: 623 MYLSGG*VATDDMRVFILAGSTVGGGSAINWSA 721
MYLSGG +AT D V ILAGSTVGGGS INWSA
Sbjct: 226 MYLSGGLLATSDTNVVILAGSTVGGGSTINWSA 258
Score = 54.7 bits (130), Expect(2) = 9e-39
Identities = 28/75 (37%), Positives = 43/75 (57%)
Frame = +1
Query: 178 QLDESEDNCSWKAIGYCGPDPEFKAQLKNHFLQGGQENNKEEDDAEQVIGPLYKGLVHLN 357
++DE N +WKAIGY GP P+ +H ++ +E K++ E++ GPLY G+V L
Sbjct: 85 RVDEKGRNLAWKAIGYNGPSPDHS----DHEVELNEEKKKKKP--EEIFGPLYNGIVDLK 138
Query: 358 NPRDITADALRQFGF 402
+PR+ L GF
Sbjct: 139 SPREAVEKKLAGRGF 153
>gb|AAK64154.1| unknown protein [Arabidopsis thaliana]
Length = 748
Score = 96.3 bits (238), Expect(2) = 2e-22
Identities = 50/85 (58%), Positives = 61/85 (70%)
Frame = +2
Query: 467 IQCDAVGGGSGSGGGLIAGILAKAGYKVLVKEKGGYTARNNLSLLEAPSMDQMYLSGG*V 646
I+CDAV GSGSGGG+ A LAKAG KVLV EKG Y ++ S LE PSM ++Y GG +
Sbjct: 236 IRCDAVVVGSGSGGGVAAANLAKAGLKVLVLEKGNYFTAHDYSGLEVPSMLELYEKGGLL 295
Query: 647 ATDDMRVFILAGSTVGGGSAINWSA 721
T D + +LAGS VGGG+A+NWSA
Sbjct: 296 TTVDGKFMLLAGSAVGGGTAVNWSA 320
Score = 31.6 bits (70), Expect(2) = 2e-22
Identities = 17/66 (25%), Positives = 33/66 (49%)
Frame = +1
Query: 178 QLDESEDNCSWKAIGYCGPDPEFKAQLKNHFLQGGQENNKEEDDAEQVIGPLYKGLVHLN 357
Q DE+ N + +AIGYC + G + ++ ++ +A++ PL KG++
Sbjct: 162 QTDENLKNPALEAIGYC--------------IDGTERSSNKKSEADEKRRPLEKGIIETM 207
Query: 358 NPRDIT 375
+ D+T
Sbjct: 208 HESDVT 213
>ref|NP_194586.1| putative protein; protein id: At4g28570.1, supported by cDNA:
19314., supported by cDNA: gi_14532705 [Arabidopsis
thaliana] gi|7487681|pir||T10651 hypothetical protein
T5F17.20 - Arabidopsis thaliana
gi|7269712|emb|CAB81445.1| putative protein [Arabidopsis
thaliana] gi|22798798|emb|CAC87644.1| alcohol oxidase
[Arabidopsis thaliana] gi|25054929|gb|AAN71941.1|
unknown protein [Arabidopsis thaliana]
Length = 748
Score = 96.3 bits (238), Expect(2) = 2e-22
Identities = 50/85 (58%), Positives = 61/85 (70%)
Frame = +2
Query: 467 IQCDAVGGGSGSGGGLIAGILAKAGYKVLVKEKGGYTARNNLSLLEAPSMDQMYLSGG*V 646
I+CDAV GSGSGGG+ A LAKAG KVLV EKG Y ++ S LE PSM ++Y GG +
Sbjct: 236 IRCDAVVVGSGSGGGVAAANLAKAGLKVLVLEKGNYFTAHDYSGLEVPSMLELYEKGGLL 295
Query: 647 ATDDMRVFILAGSTVGGGSAINWSA 721
T D + +LAGS VGGG+A+NWSA
Sbjct: 296 TTVDGKFMLLAGSAVGGGTAVNWSA 320
Score = 31.6 bits (70), Expect(2) = 2e-22
Identities = 17/66 (25%), Positives = 33/66 (49%)
Frame = +1
Query: 178 QLDESEDNCSWKAIGYCGPDPEFKAQLKNHFLQGGQENNKEEDDAEQVIGPLYKGLVHLN 357
Q DE+ N + +AIGYC + G + ++ ++ +A++ PL KG++
Sbjct: 162 QTDENLKNPALEAIGYC--------------IDGTERSSNKKSEADEKRRPLEKGIIETM 207
Query: 358 NPRDIT 375
+ D+T
Sbjct: 208 HESDVT 213
>gb|AAM63097.1| unknown [Arabidopsis thaliana]
Length = 748
Score = 96.3 bits (238), Expect(2) = 3e-22
Identities = 50/85 (58%), Positives = 61/85 (70%)
Frame = +2
Query: 467 IQCDAVGGGSGSGGGLIAGILAKAGYKVLVKEKGGYTARNNLSLLEAPSMDQMYLSGG*V 646
I+CDAV GSGSGGG+ A LAKAG KVLV EKG Y ++ S LE PSM ++Y GG +
Sbjct: 236 IRCDAVVVGSGSGGGVAAANLAKAGLKVLVLEKGNYFTAHDYSGLEVPSMLELYEKGGLL 295
Query: 647 ATDDMRVFILAGSTVGGGSAINWSA 721
T D + +LAGS VGGG+A+NWSA
Sbjct: 296 TTVDGKFMLLAGSAVGGGTAVNWSA 320
Score = 31.2 bits (69), Expect(2) = 3e-22
Identities = 17/66 (25%), Positives = 33/66 (49%)
Frame = +1
Query: 178 QLDESEDNCSWKAIGYCGPDPEFKAQLKNHFLQGGQENNKEEDDAEQVIGPLYKGLVHLN 357
Q DE+ N + +AIGYC + G + ++ ++ +A++ PL KG++
Sbjct: 162 QTDENLKNPALEAIGYC--------------IDGTERSSNKKSEADEKRRPLEKGIIETM 207
Query: 358 NPRDIT 375
+ D+T
Sbjct: 208 HESDLT 213
>gb|AAL31024.1|AC078948_8 putative alcohol oxidase [Oryza sativa]
Length = 756
Score = 97.8 bits (242), Expect(2) = 5e-22
Identities = 54/121 (44%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Frame = +2
Query: 368 ISLQMLSDNSDSRVSVIRRKPKASPNISSPSL---LIQCDAVGGGSGSGGGLIAGILAKA 538
+ + L DN+ +S+ + SSPS + CDAV GSG GGG+ A +LA A
Sbjct: 196 VETKQLDDNA-LLMSLAEKGLALKTGASSPSAHHHTVLCDAVVVGSGCGGGVAAAVLASA 254
Query: 539 GYKVLVKEKGGYTARNNLSLLEAPSMDQMYLSGG*VATDDMRVFILAGSTVGGGSAINWS 718
GYKV+V EKG Y A + S LE P+M+++Y +GG +T ++ + AG+TVGGGSA+NWS
Sbjct: 255 GYKVVVVEKGDYFAARDYSSLEGPTMERLYENGGVFSTANVTTTMFAGATVGGGSAVNWS 314
Query: 719 A 721
A
Sbjct: 315 A 315
Score = 28.9 bits (63), Expect(2) = 5e-22
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 181 LDESEDNCSWKAIGYCGPDPEFKAQ 255
+DE+ +N SWKAIGY P E + Q
Sbjct: 145 VDENLENPSWKAIGYSVPAAEEEPQ 169
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 669,131,000
Number of Sequences: 1393205
Number of extensions: 15725074
Number of successful extensions: 91284
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 58518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85051
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
