Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007763A_C01 KMC007763A_c01
(936 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK55780.1|AC079038_14 Putative 40S ribosomal protein; contai... 367 e-100
ref|NP_198403.1| 40S ribosomal protein S3; protein id: At5g35530... 364 1e-99
ref|NP_190955.1| 40S ribosomal protein S3, putative; protein id:... 360 1e-98
ref|NP_180719.1| 40S ribosomal protein S3, putative; protein id:... 356 3e-97
gb|AAM92710.1| putative 40S ribosomal protein S3 [Triticum aesti... 353 3e-96
>gb|AAK55780.1|AC079038_14 Putative 40S ribosomal protein; contains C-terminal domain [Oryza
sativa]
Length = 233
Score = 367 bits (941), Expect = e-100
Identities = 192/228 (84%), Positives = 201/228 (87%)
Frame = -3
Query: 934 RGFVADGVFFAELNEVLTRRAR*ETVTPDVEVRVTPVKTEIIIRATRTQAVLGEKGRRIR 755
R FVADGVFFAELNE+LTR E VEVRVTP++TEIIIRATRTQ VLGEKGRRIR
Sbjct: 11 RKFVADGVFFAELNEMLTRELA-EDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIR 69
Query: 754 ELTSVVSKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM 575
ELTSVV KRF FPEN VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM
Sbjct: 70 ELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM 129
Query: 574 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVK 395
ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG PV YIDSAVRHVLLRQGVLGIKVK
Sbjct: 130 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGIKVK 189
Query: 394 IMLDWDPKGKQGPKTPLPDIVTIHSPKEEDEYIQPAAVSASDIEVPVA 251
IMLDWDPKGKQGP TPLPD+VTIH+PK+EDE+ +P E+PVA
Sbjct: 190 IMLDWDPKGKQGPMTPLPDLVTIHAPKDEDEFSKPLTA-----EIPVA 232
>ref|NP_198403.1| 40S ribosomal protein S3; protein id: At5g35530.1, supported by
cDNA: 10394., supported by cDNA: gi_16604317, supported
by cDNA: gi_20466074 [Arabidopsis thaliana]
gi|9758155|dbj|BAB08712.1| 40S ribosomal protein S3
[Arabidopsis thaliana] gi|16604318|gb|AAL24165.1|
AT5g35530/MOK9_14 [Arabidopsis thaliana]
gi|20466075|gb|AAM19959.1| AT5g35530/MOK9_14
[Arabidopsis thaliana]
Length = 248
Score = 364 bits (934), Expect = 1e-99
Identities = 188/228 (82%), Positives = 201/228 (87%)
Frame = -3
Query: 934 RGFVADGVFFAELNEVLTRRAR*ETVTPDVEVRVTPVKTEIIIRATRTQAVLGEKGRRIR 755
R FVADGVF+AELNEVLTR E VEVRVTP++TEIIIRATRTQ VLGEKGRRIR
Sbjct: 9 RKFVADGVFYAELNEVLTRELA-EDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIR 67
Query: 754 ELTSVVSKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM 575
ELTS+V KRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM
Sbjct: 68 ELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM 127
Query: 574 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVK 395
ESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YID+AVRHVLLRQGVLG+KVK
Sbjct: 128 ESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVK 187
Query: 394 IMLDWDPKGKQGPKTPLPDIVTIHSPKEEDEYIQPAAVSASDIEVPVA 251
IMLDWDPKGKQGP TPLPD+V IH+PKE+D YI PA V VP A
Sbjct: 188 IMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVTQAAFVPEA 235
>ref|NP_190955.1| 40S ribosomal protein S3, putative; protein id: At3g53870.1,
supported by cDNA: 9568., supported by cDNA:
gi_14334697, supported by cDNA: gi_16226457, supported
by cDNA: gi_16323403 [Arabidopsis thaliana]
gi|11275277|pir||T45927 ribosomal protein S3a homolog -
Arabidopsis thaliana gi|7630007|emb|CAB88349.1|
ribosomal protein S3a homolog [Arabidopsis thaliana]
gi|14334698|gb|AAK59527.1| putative ribosomal protein
S3a homolog [Arabidopsis thaliana]
gi|16226458|gb|AAL16173.1|AF428405_1 AT3g53870/F5K20_170
[Arabidopsis thaliana] gi|16323404|gb|AAL15196.1|
putative ribosomal protein S3a homolog [Arabidopsis
thaliana] gi|21618068|gb|AAM67118.1| ribosomal protein
S3a-like protein [Arabidopsis thaliana]
Length = 249
Score = 360 bits (925), Expect = 1e-98
Identities = 186/220 (84%), Positives = 197/220 (89%)
Frame = -3
Query: 934 RGFVADGVFFAELNEVLTRRAR*ETVTPDVEVRVTPVKTEIIIRATRTQAVLGEKGRRIR 755
R FVADGVF+AELNEVLTR E VEVRVTP++TEIIIRATRTQ VLGEKGRRIR
Sbjct: 9 RKFVADGVFYAELNEVLTRELA-EDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIR 67
Query: 754 ELTSVVSKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM 575
ELTS+V KRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM
Sbjct: 68 ELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM 127
Query: 574 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVK 395
ESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YIDSAVRHVLLRQGVLGIKVK
Sbjct: 128 ESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVK 187
Query: 394 IMLDWDPKGKQGPKTPLPDIVTIHSPKEEDEYIQPAAVSA 275
+MLDWDPKG GPKTPLPD+V IHSPKEE+ PA V+A
Sbjct: 188 VMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPAQVAA 227
>ref|NP_180719.1| 40S ribosomal protein S3, putative; protein id: At2g31610.1,
supported by cDNA: gi_14190418, supported by cDNA:
gi_15028252, supported by cDNA: gi_15450570, supported
by cDNA: gi_15451083, supported by cDNA: gi_20148376,
supported by cDNA: gi_20258906 [Arabidopsis thaliana]
gi|25294441|pir||H84722 hypothetical protein At2g31610
[imported] - Arabidopsis thaliana
gi|4582468|gb|AAD24852.1| 40S ribosomal protein;
contains C-terminal domain [Arabidopsis thaliana]
gi|14190419|gb|AAK55690.1|AF378887_1 At2g31610/T9H9.13
[Arabidopsis thaliana] gi|15028253|gb|AAK76715.1|
putative 40S ribosomal protein; contains C-terminal
domain [Arabidopsis thaliana] gi|15450571|gb|AAK96463.1|
At2g31610/T9H9.13 [Arabidopsis thaliana]
gi|15451084|gb|AAK96813.1| 40S ribosomal protein
[Arabidopsis thaliana] gi|20148377|gb|AAM10079.1| 40S
ribosomal protein; contains C-terminal domain
[Arabidopsis thaliana] gi|20258907|gb|AAM14147.1|
putative 40S ribosomal protein [Arabidopsis thaliana]
Length = 250
Score = 356 bits (913), Expect = 3e-97
Identities = 183/220 (83%), Positives = 196/220 (88%)
Frame = -3
Query: 934 RGFVADGVFFAELNEVLTRRAR*ETVTPDVEVRVTPVKTEIIIRATRTQAVLGEKGRRIR 755
R FVADGVF+AELNEVLTR E VEVRVTP++TEIIIRATRTQ VLGEKGRRIR
Sbjct: 9 RKFVADGVFYAELNEVLTRELA-EDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIR 67
Query: 754 ELTSVVSKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM 575
ELTS+V KRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM
Sbjct: 68 ELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM 127
Query: 574 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVK 395
ESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YID+AVRHVLLRQGVLGIKVK
Sbjct: 128 ESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVK 187
Query: 394 IMLDWDPKGKQGPKTPLPDIVTIHSPKEEDEYIQPAAVSA 275
IMLDWDP GK GPKTPLPD+V IH+PK++ Y PA +A
Sbjct: 188 IMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAA 227
>gb|AAM92710.1| putative 40S ribosomal protein S3 [Triticum aestivum]
Length = 227
Score = 353 bits (905), Expect = 3e-96
Identities = 184/216 (85%), Positives = 193/216 (89%)
Frame = -3
Query: 928 FVADGVFFAELNEVLTRRAR*ETVTPDVEVRVTPVKTEIIIRATRTQAVLGEKGRRIREL 749
FV+DGVF+AELNE+LTR E VEVRVTP++TEIIIRATRTQ VLGEKGRRIREL
Sbjct: 11 FVSDGVFYAELNEMLTRELA-EDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIREL 69
Query: 748 TSVVSKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMES 569
TSVV KRF F EN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMES
Sbjct: 70 TSVVQKRFNFLENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMES 129
Query: 568 GAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIM 389
GAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV +YID+AVRHVLLRQGVLGIKVKIM
Sbjct: 130 GAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIM 189
Query: 388 LDWDPKGKQGPKTPLPDIVTIHSPKEEDEYIQPAAV 281
LDWDPKGK GP TPLPD+VTIH PKEE+E PA V
Sbjct: 190 LDWDPKGKLGPTTPLPDLVTIHPPKEENELRPPALV 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 774,367,741
Number of Sequences: 1393205
Number of extensions: 17012431
Number of successful extensions: 45494
Number of sequences better than 10.0: 226
Number of HSP's better than 10.0 without gapping: 43359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45379
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 52137106016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
