Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007656A_C01 KMC007656A_c01
(1003 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF34437.1|AF172282_26 unknown protein [Oryza sativa] 51 3e-05
dbj|BAC42895.1| unknown protein [Arabidopsis thaliana] 50 4e-05
ref|NP_175051.1| unknown protein; protein id: At1g43850.1, suppo... 50 4e-05
pir||D96502 hypothetical protein F28H19.10 [imported] - Arabidop... 50 4e-05
pir||T02073 hypothetical protein S25-PR6 - common tobacco gi|117... 40 0.043
>gb|AAF34437.1|AF172282_26 unknown protein [Oryza sativa]
Length = 933
Score = 50.8 bits (120), Expect = 3e-05
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 30/105 (28%)
Frame = -2
Query: 978 SGVGVGGYGTMA-LGQSSMPNGMRAAMLNNSV-MNGRGGMSF------------------ 859
SG+G G+G M LG + +G+R A+ NN++ ++GR GM+
Sbjct: 828 SGMGGMGFGAMGGLGPNHAASGLRTAIANNAMAISGRMGMNHSAHDLSQLGQLQQQQQHQ 887
Query: 858 ----------RDQAMNHPPDMSNPLLSGLGAVTGFSNLQSDWKPS 754
+ Q D+ N LLSGL A F+NLQ DWKPS
Sbjct: 888 HQHQHQHQQQQQQQQQQQHDLGNQLLSGLRAANSFNNLQYDWKPS 932
>dbj|BAC42895.1| unknown protein [Arabidopsis thaliana]
Length = 247
Score = 50.4 bits (119), Expect = 4e-05
Identities = 33/69 (47%), Positives = 39/69 (55%)
Frame = -2
Query: 969 GVGGYGTMALGQSSMPNGMRAAMLNNSVMNGRGGMSFRDQAMNHPPDMSNPLLSGLGAVT 790
G GG+G +GQS NG+ NNS+MNGR GM RD N D+ N L LGAV
Sbjct: 185 GAGGFGG-GIGQSMAANGINNINGNNSLMNGRVGMMVRDP--NGQQDLGNQL---LGAVN 238
Query: 789 GFSNLQSDW 763
GF+N DW
Sbjct: 239 GFNNF--DW 245
>ref|NP_175051.1| unknown protein; protein id: At1g43850.1, supported by cDNA:
gi_18033921 [Arabidopsis thaliana]
gi|18033922|gb|AAL57277.1| SEUSS transcriptional
co-regulator [Arabidopsis thaliana]
Length = 877
Score = 50.4 bits (119), Expect = 4e-05
Identities = 33/69 (47%), Positives = 39/69 (55%)
Frame = -2
Query: 969 GVGGYGTMALGQSSMPNGMRAAMLNNSVMNGRGGMSFRDQAMNHPPDMSNPLLSGLGAVT 790
G GG+G +GQS NG+ NNS+MNGR GM RD N D+ N L LGAV
Sbjct: 815 GAGGFGG-GIGQSMAANGINNINGNNSLMNGRVGMMVRDP--NGQQDLGNQL---LGAVN 868
Query: 789 GFSNLQSDW 763
GF+N DW
Sbjct: 869 GFNNF--DW 875
>pir||D96502 hypothetical protein F28H19.10 [imported] - Arabidopsis thaliana
gi|7523675|gb|AAF63115.1|AC006423_16 Hypothetical
protein [Arabidopsis thaliana]
Length = 859
Score = 50.4 bits (119), Expect = 4e-05
Identities = 33/69 (47%), Positives = 39/69 (55%)
Frame = -2
Query: 969 GVGGYGTMALGQSSMPNGMRAAMLNNSVMNGRGGMSFRDQAMNHPPDMSNPLLSGLGAVT 790
G GG+G +GQS NG+ NNS+MNGR GM RD N D+ N L LGAV
Sbjct: 797 GAGGFGG-GIGQSMAANGINNINGNNSLMNGRVGMMVRDP--NGQQDLGNQL---LGAVN 850
Query: 789 GFSNLQSDW 763
GF+N DW
Sbjct: 851 GFNNF--DW 857
>pir||T02073 hypothetical protein S25-PR6 - common tobacco
gi|1174199|gb|AAA86652.1| S25-PR6
Length = 193
Score = 40.4 bits (93), Expect = 0.043
Identities = 28/62 (45%), Positives = 41/62 (65%), Gaps = 6/62 (9%)
Frame = -2
Query: 978 SGVGVG-GYGTMA--LGQSSMPNGMRAAMLNNSV-MNGRGGMSF-RDQAMN-HPPDMSNP 817
+ +G+ GYG M L Q++M NG+RAA+ N+SV MNGR GM R+Q+++ D+ N
Sbjct: 130 ANIGISPGYGNMGNGLSQAAMANGIRAALGNSSVAMNGRVGMPMAREQSVSQQQQDLGNQ 189
Query: 816 LL 811
LL
Sbjct: 190 LL 191
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 932,109,014
Number of Sequences: 1393205
Number of extensions: 22012880
Number of successful extensions: 57932
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 50223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56500
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 57669751843
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
