Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007630A_C01 KMC007630A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF18438.1|AF192467_1 Sgt1 [Oryza sativa] 34 1.5
dbj|BAB19060.1| Sgt1 [Oryza sativa (japonica cultivar-group)] 34 1.5
emb|CAB61630.1| putative protein phosphatase [Rubus idaeus] 33 3.3
ref|NP_194088.1| phosphatase like protein; protein id: At4g23570... 32 7.3
gb|AAL33611.1|AF439975_1 SGT1a [Arabidopsis thaliana] 32 7.3
>gb|AAF18438.1|AF192467_1 Sgt1 [Oryza sativa]
Length = 367
Score = 33.9 bits (76), Expect = 1.5
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = -2
Query: 568 PAYRSSRSSTKDWDKLAAMVKKEVLQLKCE 479
P+Y SS+S KDWDKL A VKKE + K E
Sbjct: 276 PSYPSSKSK-KDWDKLEAEVKKEEKEEKLE 304
>dbj|BAB19060.1| Sgt1 [Oryza sativa (japonica cultivar-group)]
Length = 367
Score = 33.9 bits (76), Expect = 1.5
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = -2
Query: 568 PAYRSSRSSTKDWDKLAAMVKKEVLQLKCE 479
P+Y SS+S KDWDKL A VKKE + K E
Sbjct: 276 PSYPSSKSK-KDWDKLEAEVKKEEKEEKLE 304
>emb|CAB61630.1| putative protein phosphatase [Rubus idaeus]
Length = 327
Score = 32.7 bits (73), Expect = 3.3
Identities = 14/23 (60%), Positives = 16/23 (68%)
Frame = -2
Query: 568 PAYRSSRSSTKDWDKLAAMVKKE 500
P+Y SS+ DWDKL A VKKE
Sbjct: 235 PSYPSSKPKRVDWDKLEAQVKKE 257
>ref|NP_194088.1| phosphatase like protein; protein id: At4g23570.1, supported by
cDNA: gi_17017307, supported by cDNA: gi_17381043,
supported by cDNA: gi_20465860 [Arabidopsis thaliana]
gi|7486748|pir||T05589 hypothetical protein F9D16.40 -
Arabidopsis thaliana gi|4454026|emb|CAA23023.1|
phosphatase like protein [Arabidopsis thaliana]
gi|7269205|emb|CAB79312.1| phosphatase like protein
[Arabidopsis thaliana] gi|17381044|gb|AAL36334.1|
putative phosphatase [Arabidopsis thaliana]
gi|20465861|gb|AAM20035.1| putative phosphatase
[Arabidopsis thaliana]
Length = 350
Score = 31.6 bits (70), Expect = 7.3
Identities = 17/30 (56%), Positives = 19/30 (62%)
Frame = -2
Query: 568 PAYRSSRSSTKDWDKLAAMVKKEVLQLKCE 479
PAY SS+ KDWDKL A VKK+ K E
Sbjct: 259 PAYPSSKK-VKDWDKLEAEVKKQEKDEKLE 287
>gb|AAL33611.1|AF439975_1 SGT1a [Arabidopsis thaliana]
Length = 350
Score = 31.6 bits (70), Expect = 7.3
Identities = 17/30 (56%), Positives = 19/30 (62%)
Frame = -2
Query: 568 PAYRSSRSSTKDWDKLAAMVKKEVLQLKCE 479
PAY SS+ KDWDKL A VKK+ K E
Sbjct: 259 PAYPSSKK-VKDWDKLEAEVKKQEKDEKLE 287
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,653,668
Number of Sequences: 1393205
Number of extensions: 8746586
Number of successful extensions: 18660
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18655
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
