Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007629A_C01 KMC007629A_c01
(1095 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB68042.1| putative aspartate-arginine-rich mRNA binding pro... 161 2e-38
ref|NP_199954.1| arginine-aspartate-rich RNA binding protein-lik... 161 2e-38
gb|AAB68041.1| putative aspartate-arginine-rich mRNA binding pro... 161 2e-38
dbj|BAC57372.1| OSJNBa0027N13.9 [Oryza sativa (japonica cultivar... 160 4e-38
dbj|BAC39261.1| unnamed protein product [Mus musculus] 111 2e-23
>gb|AAB68042.1| putative aspartate-arginine-rich mRNA binding protein [Arabidopsis
thaliana]
Length = 156
Score = 161 bits (407), Expect = 2e-38
Identities = 90/165 (54%), Positives = 112/165 (67%), Gaps = 2/165 (1%)
Frame = -1
Query: 1095 KMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFISEFQTAKEKAIEEERLARER 916
KMALCE+CGSFLVANDA ERTQSHVTGKQHVGYG+VRDFI+E + AK+K EEERL R +
Sbjct: 12 KMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVRDFIAEQKAAKDKGKEEERLVRGK 71
Query: 915 EAEERRKRKEQEYERKRRGDSSDREKHRDKDRDRERDRYRDRDSDRERSRERDVRGYRDG 736
EA+++RK +E+E E KR G SSDRE++RD+DR+R+ DR+RDR D + +R R R+
Sbjct: 72 EADDKRKPREKESESKRSG-SSDRERYRDRDRNRDGDRHRDRGRDYRKPYDRRSRSGRED 130
Query: 735 GRGVDSRLGNRRNGGRDRYRDRSRSRSPVKNSYRR--S*NPVCSY 607
RDRSRSRSP S R S +P+ Y
Sbjct: 131 -------------------RDRSRSRSPHGRSGHRRVSRSPIRQY 156
>ref|NP_199954.1| arginine-aspartate-rich RNA binding protein-like; protein id:
At5g51410.1, supported by cDNA: gi_1699050, supported by
cDNA: gi_18377713 [Arabidopsis thaliana]
gi|1699023|gb|AAB68037.1| putative
arginine-aspartate-rich RNA binding protein [Arabidopsis
thaliana] gi|1699051|gb|AAB68040.1| putative
aspartate-arginine-rich mRNA binding protein [Arabidopsis
thaliana] gi|9759287|dbj|BAB09752.1|
arginine-aspartate-rich RNA binding protein-like
[Arabidopsis thaliana] gi|18377714|gb|AAL67007.1|
putative arginine-aspartate-rich RNA binding protein
[Arabidopsis thaliana] gi|22136854|gb|AAM91771.1|
putative arginine-aspartate-rich RNA binding protein
[Arabidopsis thaliana]
Length = 334
Score = 161 bits (407), Expect = 2e-38
Identities = 90/165 (54%), Positives = 112/165 (67%), Gaps = 2/165 (1%)
Frame = -1
Query: 1095 KMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFISEFQTAKEKAIEEERLARER 916
KMALCE+CGSFLVANDA ERTQSHVTGKQHVGYG+VRDFI+E + AK+K EEERL R +
Sbjct: 190 KMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVRDFIAEQKAAKDKGKEEERLVRGK 249
Query: 915 EAEERRKRKEQEYERKRRGDSSDREKHRDKDRDRERDRYRDRDSDRERSRERDVRGYRDG 736
EA+++RK +E+E E KR G SSDRE++RD+DR+R+ DR+RDR D + +R R R+
Sbjct: 250 EADDKRKPREKESESKRSG-SSDRERYRDRDRNRDGDRHRDRGRDYRKPYDRRSRSGRED 308
Query: 735 GRGVDSRLGNRRNGGRDRYRDRSRSRSPVKNSYRR--S*NPVCSY 607
RDRSRSRSP S R S +P+ Y
Sbjct: 309 -------------------RDRSRSRSPHGRSGHRRVSRSPIRQY 334
>gb|AAB68041.1| putative aspartate-arginine-rich mRNA binding protein [Arabidopsis
thaliana]
Length = 238
Score = 161 bits (407), Expect = 2e-38
Identities = 90/165 (54%), Positives = 112/165 (67%), Gaps = 2/165 (1%)
Frame = -1
Query: 1095 KMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFISEFQTAKEKAIEEERLARER 916
KMALCE+CGSFLVANDA ERTQSHVTGKQHVGYG+VRDFI+E + AK+K EEERL R +
Sbjct: 94 KMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVRDFIAEQKAAKDKGKEEERLVRGK 153
Query: 915 EAEERRKRKEQEYERKRRGDSSDREKHRDKDRDRERDRYRDRDSDRERSRERDVRGYRDG 736
EA+++RK +E+E E KR G SSDRE++RD+DR+R+ DR+RDR D + +R R R+
Sbjct: 154 EADDKRKPREKESESKRSG-SSDRERYRDRDRNRDGDRHRDRGRDYRKPYDRRSRSGRED 212
Query: 735 GRGVDSRLGNRRNGGRDRYRDRSRSRSPVKNSYRR--S*NPVCSY 607
RDRSRSRSP S R S +P+ Y
Sbjct: 213 -------------------RDRSRSRSPHGRSGHRRVSRSPIRQY 238
>dbj|BAC57372.1| OSJNBa0027N13.9 [Oryza sativa (japonica cultivar-group)]
Length = 348
Score = 160 bits (404), Expect = 4e-38
Identities = 90/159 (56%), Positives = 111/159 (69%), Gaps = 8/159 (5%)
Frame = -1
Query: 1095 KMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFISEFQTAKEKAIEEERLARER 916
KM LCEICGSFLVA+D ERTQSHVTGKQH+GYG+VRDF++E + AKEKA +EER+ARE+
Sbjct: 188 KMELCEICGSFLVADDVLERTQSHVTGKQHIGYGLVRDFLAEHKAAKEKARDEERIAREK 247
Query: 915 EAEERRKRKEQEYERKRRGDSSDREKHRDKDRDRERDRYRDRDSDRERSRERDVRG---- 748
+AEERRK++E+EY+ R S REK DRD +RDRY DR+ RERS + RG
Sbjct: 248 KAEERRKQREKEYDVGGRDGGSRREK--SGDRDYDRDRYYDRNRGRERSHDHRDRGSEYR 305
Query: 747 ---YRDGGRGVDSRLGNRRNGGR-DRYRDRSRSRSPVKN 643
YR+G R R + R DR R RSRSRSP ++
Sbjct: 306 SSSYRNGRDSERDRHRYRSDDMRKDRSRVRSRSRSPSRH 344
>dbj|BAC39261.1| unnamed protein product [Mus musculus]
Length = 268
Score = 111 bits (278), Expect = 2e-23
Identities = 66/167 (39%), Positives = 91/167 (53%), Gaps = 13/167 (7%)
Frame = -1
Query: 1095 KMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFISEFQTAKEKAIEE----ERL 928
+M +CE+CG+FL+ DA R H+ GKQH+GY ++ + E + K EE ERL
Sbjct: 24 QMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEEPDRDERL 83
Query: 927 ARER----EAEERRKRKEQEYERKRRGDSSDREKHRDKDRD-----RERDRYRDRDSDRE 775
+E+ E E+ R+R+ +E ERKRR + +REK R +DR+ R R R+ R SDR
Sbjct: 84 KKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHSSRTSDRR 143
Query: 774 RSRERDVRGYRDGGRGVDSRLGNRRNGGRDRYRDRSRSRSPVKNSYR 634
SR RD + R R RR+ RDR R RS RS K+ R
Sbjct: 144 CSRSRDHKRSRSRDR--------RRSRSRDRRRSRSHDRSERKHRSR 182
Score = 40.8 bits (94), Expect = 0.038
Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Frame = -1
Query: 924 REREAEERRKRKEQEYERK--------RRGDSSDRE--KHRDKDRDRERDRYRDRDSDRE 775
R R + RR R ERK RR S DR+ KHR K RDRE+DR
Sbjct: 160 RSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDR--------- 210
Query: 774 RSRERDVRGYRDGGRGVDS 718
+S+E++ +G D V S
Sbjct: 211 KSKEKEKKGSDDKKSSVKS 229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 894,609,009
Number of Sequences: 1393205
Number of extensions: 20175421
Number of successful extensions: 166067
Number of sequences better than 10.0: 3770
Number of HSP's better than 10.0 without gapping: 78902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122029
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 65614730658
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
