Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007581A_C02 KMC007581A_c02
(662 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T33077 hypothetical protein C35E7.2 - Caenorhabditis elegans 33 2.6
ref|NP_492833.1| Putative nuclear protein, with a coiled coil-4 ... 33 2.6
ref|NP_727589.1| CG1488-PA [Drosophila melanogaster] gi|22833110... 32 7.6
gb|AAM11259.1| RH12404p [Drosophila melanogaster] 32 7.6
ref|NP_572780.3| CG1488-PB [Drosophila melanogaster] gi|11386681... 32 7.6
>pir||T33077 hypothetical protein C35E7.2 - Caenorhabditis elegans
Length = 687
Score = 33.5 bits (75), Expect = 2.6
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -3
Query: 237 SICACEPHLELEFYLSRVEIYAISIPRVGL*FVCQSFKTFQICNFVLFLN*FWFLGTICP 58
S+C + +LELE+Y + ++YA ++ C++ + F I N FL T CP
Sbjct: 214 SVCTYDKNLELEYYDKKTKLYAETVR-------CETTEKFAIVRSAKNEN--IFLSTYCP 264
Query: 57 KT 52
KT
Sbjct: 265 KT 266
>ref|NP_492833.1| Putative nuclear protein, with a coiled coil-4 domain, nematode
specific (80.8 kD) [Caenorhabditis elegans]
gi|15617730|gb|AAL02458.1|AF067216_5 Hypothetical
protein C35E7.2a [Caenorhabditis elegans]
Length = 707
Score = 33.5 bits (75), Expect = 2.6
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -3
Query: 237 SICACEPHLELEFYLSRVEIYAISIPRVGL*FVCQSFKTFQICNFVLFLN*FWFLGTICP 58
S+C + +LELE+Y + ++YA ++ C++ + F I N FL T CP
Sbjct: 214 SVCTYDKNLELEYYDKKTKLYAETVR-------CETTEKFAIVRSAKNEN--IFLSTYCP 264
Query: 57 KT 52
KT
Sbjct: 265 KT 266
>ref|NP_727589.1| CG1488-PA [Drosophila melanogaster] gi|22833110|gb|AAF48135.2|
CG1488-PA [Drosophila melanogaster]
Length = 383
Score = 32.0 bits (71), Expect = 7.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 138 KQTINPLL--EWISRKSQLWRDRTRVLSEAH 224
K+ INPLL +WI +++QLWRD L H
Sbjct: 107 KRMINPLLSSDWIFQRTQLWRDLDEQLQVIH 137
>gb|AAM11259.1| RH12404p [Drosophila melanogaster]
Length = 383
Score = 32.0 bits (71), Expect = 7.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 138 KQTINPLL--EWISRKSQLWRDRTRVLSEAH 224
K+ INPLL +WI +++QLWRD L H
Sbjct: 107 KRMINPLLSSDWIFQRTQLWRDLDEQLQVIH 137
>ref|NP_572780.3| CG1488-PB [Drosophila melanogaster]
gi|11386681|sp|Q9VYQ7|C311_DROME Probable cytochrome
P450 311a1 (CYPCCCXIA1) gi|22833109|gb|AAN09641.1|
CG1488-PB [Drosophila melanogaster]
Length = 483
Score = 32.0 bits (71), Expect = 7.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 138 KQTINPLL--EWISRKSQLWRDRTRVLSEAH 224
K+ INPLL +WI +++QLWRD L H
Sbjct: 207 KRMINPLLSSDWIFQRTQLWRDLDEQLQVIH 237
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,667,676
Number of Sequences: 1393205
Number of extensions: 10626790
Number of successful extensions: 18444
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18444
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
